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geneLenDataBase

Bioc current

Lengths of mRNA transcripts for a number of genomes

v1.48.0 · Package record · experiment · LGPL (>= 2)
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

4 4 exported

Complexity

5 avg / 12 max

Call network

4 nodes / 5 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →
Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

How coverage is measured·How the call graph is built

Code

Structure

Lines of code

5,221

Files

690

Compiled share

0%

Has compiled src

No

Language breakdown

R 299 (5.7%)Docs 4,922 (94.3%)

API

Exported functions

4

Internal functions

0

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.11.0

System requirements

–

C++ standard

–

License

LGPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

26

First release

2013-12-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

1

LOC over versions

v2.13: 4,896 LOCv2.14: 4,896 LOCv3.0: 4,896 LOCv3.1: 4,896 LOCv3.2: 4,896 LOCv3.3: 4,899 LOCv3.4: 4,899 LOCv3.5: 4,899 LOCv3.6: 4,899 LOCv3.7: 4,899 LOCv3.8: 4,899 LOCv3.9: 4,899 LOCv3.10: 4,899 LOCv3.11: 4,899 LOCv3.12: 4,899 LOCv3.13: 4,899 LOCv3.14: 4,899 LOCv3.15: 4,899 LOCv3.16: 4,899 LOCv3.17: 4,899 LOCv3.18: 4,899 LOCv3.19: 5,025 LOCv3.20: 5,221 LOCv3.21: 5,221 LOCv3.22: 5,221 LOCv3.23: 5,221 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMEYes · 99 wordsVignettesNoNEWSYes · 67% structuredCitation fileNo
Help pages
342 (1 internal)includes a package overview page
Examples that run
100%340 run in a plain check · 1 never run
Exported functions with examples
100%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
0%
How these are measured

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/federicomarini/genelendatabase on 2026-10-21.

Continuous integration (2)
GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)
pkgdown

GitHub Pages site last deployed 2024-06-12 · The repository has a site deploy workflow

Coverage (1)
Coverage reporting
How this is detected·Detection ruleset v4 (2026-10-20)

Datasets

Bundled datasets · 337
NameClassSizeAlso in
anoCar1.ensGene.LENGTHdata.frame20,951 × 3No other package
anoCar1.genscan.LENGTHdata.frame28,102 × 3No other package
anoCar1.xenoRefGene.LENGTHdata.frame280,427 × 3No other package
anoGam1.ensGene.LENGTHdata.frame15,802 × 3No other package
anoGam1.geneid.LENGTHdata.frame16,857 × 3No other package
anoGam1.genscan.LENGTHdata.frame26,900 × 3No other package
apiMel1.genscan.LENGTHdata.frame21,863 × 3No other package
apiMel2.ensGene.LENGTHdata.frame27,755 × 3No other package
apiMel2.geneid.LENGTHdata.frame17,461 × 3No other package
apiMel2.genscan.LENGTHdata.frame20,841 × 3No other package
aplCal1.xenoRefGene.LENGTHdata.frame159,589 × 3No other package
bosTau2.geneSymbol.LENGTHdata.frame12,997 × 3No other package
bosTau2.geneid.LENGTHdata.frame98,183 × 3No other package
bosTau2.genscan.LENGTHdata.frame61,380 × 3No other package
bosTau2.refGene.LENGTHdata.frame12,997 × 3No other package
bosTau2.sgpGene.LENGTHdata.frame44,919 × 3No other package
bosTau3.ensGene.LENGTHdata.frame31,417 × 3No other package
bosTau3.geneSymbol.LENGTHdata.frame11,217 × 3No other package
bosTau3.geneid.LENGTHdata.frame50,657 × 3No other package
bosTau3.genscan.LENGTHdata.frame51,509 × 3No other package
bosTau3.refGene.LENGTHdata.frame11,217 × 3No other package
bosTau3.sgpGene.LENGTHdata.frame41,496 × 3No other package
bosTau4.ensGene.LENGTHdata.frame30,508 × 3No other package
bosTau4.geneSymbol.LENGTHdata.frame10,912 × 3No other package
bosTau4.genscan.LENGTHdata.frame49,598 × 3No other package
bosTau4.nscanGene.LENGTHdata.frame10,433 × 3No other package
bosTau4.refGene.LENGTHdata.frame10,912 × 3No other package
braFlo1.xenoRefGene.LENGTHdata.frame140,583 × 3No other package
caeJap1.xenoRefGene.LENGTHdata.frame124,422 × 3No other package
caePb1.xenoRefGene.LENGTHdata.frame174,251 × 3No other package
caePb2.xenoRefGene.LENGTHdata.frame166,677 × 3No other package
caeRem2.xenoRefGene.LENGTHdata.frame151,197 × 3No other package
caeRem3.xenoRefGene.LENGTHdata.frame134,625 × 3No other package
calJac1.genscan.LENGTHdata.frame64,005 × 3No other package
calJac1.nscanGene.LENGTHdata.frame38,769 × 3No other package
calJac1.xenoRefGene.LENGTHdata.frame246,593 × 3No other package
canFam1.ensGene.LENGTHdata.frame34,903 × 3No other package
canFam1.geneSymbol.LENGTHdata.frame1,031 × 3No other package
canFam1.genscan.LENGTHdata.frame44,628 × 3No other package
canFam1.nscanGene.LENGTHdata.frame22,392 × 3No other package
canFam1.refGene.LENGTHdata.frame1,031 × 3No other package
canFam1.xenoRefGene.LENGTHdata.frame210,498 × 3No other package
canFam2.ensGene.LENGTHdata.frame30,299 × 3No other package
canFam2.geneSymbol.LENGTHdata.frame1,035 × 3No other package
canFam2.genscan.LENGTHdata.frame43,544 × 3No other package
canFam2.nscanGene.LENGTHdata.frame24,615 × 3No other package
canFam2.refGene.LENGTHdata.frame1,035 × 3No other package
canFam2.xenoRefGene.LENGTHdata.frame207,786 × 3No other package
cavPor3.ensGene.LENGTHdata.frame24,925 × 3No other package
cavPor3.genscan.LENGTHdata.frame70,161 × 3No other package
cavPor3.nscanGene.LENGTHdata.frame24,212 × 3No other package
cavPor3.xenoRefGene.LENGTHdata.frame215,949 × 3No other package
cb1.xenoRefGene.LENGTHdata.frame148,572 × 3No other package
cb3.xenoRefGene.LENGTHdata.frame125,815 × 3No other package
ce2.geneSymbol.LENGTHdata.frame25,006 × 3No other package
ce2.geneid.LENGTHdata.frame22,298 × 3No other package
ce2.refGene.LENGTHdata.frame25,006 × 3No other package
ce4.geneSymbol.LENGTHdata.frame24,901 × 3No other package
ce4.refGene.LENGTHdata.frame24,901 × 3No other package
ce4.xenoRefGene.LENGTHdata.frame24,445 × 3No other package
ce6.ensGene.LENGTHdata.frame35,019 × 3No other package
ce6.geneSymbol.LENGTHdata.frame24,909 × 3No other package
ce6.refGene.LENGTHdata.frame24,909 × 3No other package
ce6.xenoRefGene.LENGTHdata.frame24,634 × 3No other package
ci1.geneSymbol.LENGTHdata.frame938 × 3No other package
ci1.refGene.LENGTHdata.frame938 × 3No other package
ci1.xenoRefGene.LENGTHdata.frame106,383 × 3No other package
ci2.ensGene.LENGTHdata.frame20,175 × 3No other package
ci2.geneSymbol.LENGTHdata.frame899 × 3No other package
ci2.refGene.LENGTHdata.frame899 × 3No other package
ci2.xenoRefGene.LENGTHdata.frame181,668 × 3No other package
danRer3.ensGene.LENGTHdata.frame32,143 × 3No other package
danRer3.geneSymbol.LENGTHdata.frame16,416 × 3No other package
danRer3.refGene.LENGTHdata.frame16,414 × 3No other package
danRer4.ensGene.LENGTHdata.frame36,065 × 3No other package
danRer4.geneSymbol.LENGTHdata.frame16,498 × 3No other package
danRer4.genscan.LENGTHdata.frame44,534 × 3No other package
danRer4.nscanGene.LENGTHdata.frame38,648 × 3No other package
danRer4.refGene.LENGTHdata.frame16,496 × 3No other package
danRer5.ensGene.LENGTHdata.frame35,653 × 3No other package
danRer5.geneSymbol.LENGTHdata.frame15,146 × 3No other package
danRer5.refGene.LENGTHdata.frame15,144 × 3No other package
danRer5.vegaGene.LENGTHdata.frame13,933 × 3No other package
danRer5.vegaPseudoGene.LENGTHdata.frame68 × 3No other package
danRer6.ensGene.LENGTHdata.frame32,337 × 3No other package
danRer6.geneSymbol.LENGTHdata.frame15,419 × 3No other package
danRer6.refGene.LENGTHdata.frame15,417 × 3No other package
danRer6.xenoRefGene.LENGTHdata.frame189,158 × 3No other package
dm1.geneSymbol.LENGTHdata.frame22,317 × 3No other package
dm1.genscan.LENGTHdata.frame16,342 × 3No other package
dm1.refGene.LENGTHdata.frame22,317 × 3No other package
dm2.geneSymbol.LENGTHdata.frame23,329 × 3No other package
dm2.geneid.LENGTHdata.frame14,147 × 3No other package
dm2.genscan.LENGTHdata.frame16,434 × 3No other package
dm2.nscanGene.LENGTHdata.frame14,106 × 3No other package
dm2.refGene.LENGTHdata.frame23,329 × 3No other package
dm3.geneSymbol.LENGTHdata.frame26,521 × 3No other package
dm3.nscanPasaGene.LENGTHdata.frame17,830 × 3No other package
dm3.refGene.LENGTHdata.frame26,521 × 3No other package
dp2.genscan.LENGTHdata.frame16,795 × 3No other package
dp2.xenoRefGene.LENGTHdata.frame120,722 × 3No other package
dp3.geneid.LENGTHdata.frame14,883 × 3No other package
dp3.genscan.LENGTHdata.frame16,906 × 3No other package
dp3.xenoRefGene.LENGTHdata.frame65,782 × 3No other package
droAna1.geneid.LENGTHdata.frame27,006 × 3No other package
droAna1.genscan.LENGTHdata.frame23,991 × 3No other package
droAna1.xenoRefGene.LENGTHdata.frame125,034 × 3No other package
droAna2.genscan.LENGTHdata.frame29,704 × 3No other package
droAna2.xenoRefGene.LENGTHdata.frame166,281 × 3No other package
droEre1.genscan.LENGTHdata.frame17,531 × 3No other package
droEre1.xenoRefGene.LENGTHdata.frame166,161 × 3No other package
droGri1.genscan.LENGTHdata.frame23,037 × 3No other package
droGri1.xenoRefGene.LENGTHdata.frame177,723 × 3No other package
droMoj1.geneid.LENGTHdata.frame49,949 × 3No other package
droMoj1.genscan.LENGTHdata.frame32,550 × 3No other package
droMoj1.xenoRefGene.LENGTHdata.frame133,300 × 3No other package
droMoj2.genscan.LENGTHdata.frame21,516 × 3No other package
droMoj2.xenoRefGene.LENGTHdata.frame164,524 × 3No other package
droPer1.genscan.LENGTHdata.frame25,212 × 3No other package
droPer1.xenoRefGene.LENGTHdata.frame166,527 × 3No other package
droSec1.genscan.LENGTHdata.frame19,811 × 3No other package
droSec1.xenoRefGene.LENGTHdata.frame171,544 × 3No other package
droSim1.geneid.LENGTHdata.frame15,151 × 3No other package
droSim1.genscan.LENGTHdata.frame16,373 × 3No other package
droSim1.xenoRefGene.LENGTHdata.frame148,865 × 3No other package
droVir1.geneid.LENGTHdata.frame41,611 × 3No other package
droVir1.genscan.LENGTHdata.frame25,757 × 3No other package
droVir1.xenoRefGene.LENGTHdata.frame150,843 × 3No other package
droVir2.genscan.LENGTHdata.frame21,080 × 3No other package
droVir2.xenoRefGene.LENGTHdata.frame166,028 × 3No other package
droYak1.geneid.LENGTHdata.frame17,621 × 3No other package
droYak1.genscan.LENGTHdata.frame20,752 × 3No other package
droYak1.xenoRefGene.LENGTHdata.frame137,891 × 3No other package
droYak2.genscan.LENGTHdata.frame20,027 × 3No other package
droYak2.xenoRefGene.LENGTHdata.frame160,783 × 3No other package
equCab1.geneSymbol.LENGTHdata.frame915 × 3No other package
equCab1.geneid.LENGTHdata.frame35,577 × 3No other package
equCab1.nscanGene.LENGTHdata.frame15,136 × 3No other package
equCab1.refGene.LENGTHdata.frame915 × 3No other package
equCab1.sgpGene.LENGTHdata.frame30,403 × 3No other package
equCab2.ensGene.LENGTHdata.frame28,621 × 3No other package
equCab2.geneSymbol.LENGTHdata.frame1,808 × 3No other package
equCab2.nscanGene.LENGTHdata.frame19,612 × 3No other package
equCab2.refGene.LENGTHdata.frame1,808 × 3No other package
equCab2.xenoRefGene.LENGTHdata.frame200,659 × 3No other package
felCat3.ensGene.LENGTHdata.frame34,314 × 3No other package
felCat3.geneSymbol.LENGTHdata.frame536 × 3No other package
felCat3.geneid.LENGTHdata.frame204,448 × 3No other package
felCat3.genscan.LENGTHdata.frame75,440 × 3No other package
felCat3.nscanGene.LENGTHdata.frame28,384 × 3No other package
felCat3.refGene.LENGTHdata.frame536 × 3No other package
felCat3.sgpGene.LENGTHdata.frame51,619 × 3No other package
felCat3.xenoRefGene.LENGTHdata.frame430,767 × 3No other package
fr1.ensGene.LENGTHdata.frame38,510 × 3No other package
fr1.genscan.LENGTHdata.frame36,106 × 3No other package
fr2.ensGene.LENGTHdata.frame48,623 × 3No other package
galGal2.ensGene.LENGTHdata.frame24,747 × 3No other package
galGal2.geneSymbol.LENGTHdata.frame4,849 × 3No other package
galGal2.geneid.LENGTHdata.frame25,335 × 3No other package
galGal2.genscan.LENGTHdata.frame33,404 × 3No other package
galGal2.refGene.LENGTHdata.frame4,849 × 3No other package
galGal2.sgpGene.LENGTHdata.frame18,322 × 3No other package
galGal3.ensGene.LENGTHdata.frame23,316 × 3No other package
galGal3.geneSymbol.LENGTHdata.frame4,705 × 3No other package
galGal3.genscan.LENGTHdata.frame32,629 × 3No other package
galGal3.nscanGene.LENGTHdata.frame22,089 × 3No other package
galGal3.refGene.LENGTHdata.frame4,705 × 3No other package
galGal3.xenoRefGene.LENGTHdata.frame176,028 × 3No other package
gasAcu1.ensGene.LENGTHdata.frame29,109 × 3No other package
gasAcu1.nscanGene.LENGTHdata.frame38,860 × 3No other package
hg16.acembly.LENGTHdata.frame222,699 × 3No other package
hg16.ensGene.LENGTHdata.frame33,633 × 3No other package
hg16.exoniphy.LENGTHdata.frame177,040 × 3No other package
hg16.geneSymbol.LENGTHdata.frame33,646 × 3No other package
hg16.geneid.LENGTHdata.frame32,255 × 3No other package
hg16.genscan.LENGTHdata.frame42,974 × 3No other package
hg16.knownGene.LENGTHdata.frame43,232 × 3No other package
hg16.refGene.LENGTHdata.frame33,642 × 3No other package
hg16.sgpGene.LENGTHdata.frame42,880 × 3No other package
hg17.acembly.LENGTHdata.frame243,551 × 3No other package
hg17.acescan.LENGTHdata.frame4,486 × 3No other package
hg17.ccdsGene.LENGTHdata.frame14,332 × 3No other package
hg17.ensGene.LENGTHdata.frame33,581 × 3No other package
hg17.exoniphy.LENGTHdata.frame176,927 × 3No other package
hg17.geneSymbol.LENGTHdata.frame33,662 × 3No other package
hg17.geneid.LENGTHdata.frame32,264 × 3No other package
hg17.genscan.LENGTHdata.frame42,807 × 3No other package
hg17.knownGene.LENGTHdata.frame39,368 × 3No other package
hg17.refGene.LENGTHdata.frame33,658 × 3No other package
hg17.sgpGene.LENGTHdata.frame33,665 × 3No other package
hg17.vegaGene.LENGTHdata.frame11,654 × 3No other package
hg17.vegaPseudoGene.LENGTHdata.frame4,450 × 3No other package
hg17.xenoRefGene.LENGTHdata.frame113,425 × 3No other package
hg18.acembly.LENGTHdata.frame258,618 × 3No other package
hg18.acescan.LENGTHdata.frame4,486 × 3No other package
hg18.ccdsGene.LENGTHdata.frame19,856 × 3No other package
hg18.ensGene.LENGTHdata.frame63,280 × 3No other package
hg18.exoniphy.LENGTHdata.frame178,162 × 3No other package
hg18.geneSymbol.LENGTHdata.frame34,332 × 3No other package
hg18.geneid.LENGTHdata.frame33,410 × 3No other package
hg18.genscan.LENGTHdata.frame43,122 × 3No other package
hg18.knownGene.LENGTHdata.frame66,803 × 3No other package
hg18.knownGeneOld3.LENGTHdata.frame56,722 × 3No other package
hg18.refGene.LENGTHdata.frame34,328 × 3No other package
hg18.sgpGene.LENGTHdata.frame34,023 × 3No other package
hg18.sibGene.LENGTHdata.frame200,639 × 3No other package
hg18.xenoRefGene.LENGTHdata.frame117,059 × 3No other package
hg19.ccdsGene.LENGTHdata.frame23,754 × 3No other package
hg19.ensGene.LENGTHdata.frame102,009 × 3No other package
hg19.exoniphy.LENGTHdata.frame186,601 × 3No other package
hg19.geneSymbol.LENGTHdata.frame35,433 × 3No other package
hg19.knownGene.LENGTHdata.frame77,614 × 3No other package
hg19.nscanGene.LENGTHdata.frame67,448 × 3No other package
hg19.refGene.LENGTHdata.frame35,429 × 3No other package
hg19.xenoRefGene.LENGTHdata.frame125,276 × 3No other package
loxAfr3.xenoRefGene.LENGTHdata.frame270,315 × 3No other package
mm7.ensGene.LENGTHdata.frame33,902 × 3No other package
mm7.geneSymbol.LENGTHdata.frame26,605 × 3No other package
mm7.geneid.LENGTHdata.frame34,992 × 3No other package
mm7.genscan.LENGTHdata.frame46,116 × 3No other package
mm7.knownGene.LENGTHdata.frame31,449 × 3No other package
mm7.refGene.LENGTHdata.frame26,603 × 3No other package
mm7.sgpGene.LENGTHdata.frame35,977 × 3No other package
mm7.xenoRefGene.LENGTHdata.frame186,014 × 3No other package
mm8.ccdsGene.LENGTHdata.frame13,333 × 3No other package
mm8.ensGene.LENGTHdata.frame34,831 × 3No other package
mm8.geneSymbol.LENGTHdata.frame26,358 × 3No other package
mm8.geneid.LENGTHdata.frame35,954 × 3No other package
mm8.genscan.LENGTHdata.frame44,899 × 3No other package
mm8.knownGene.LENGTHdata.frame31,863 × 3No other package
mm8.nscanGene.LENGTHdata.frame24,784 × 3No other package
mm8.refGene.LENGTHdata.frame26,355 × 3No other package
mm8.sgpGene.LENGTHdata.frame35,469 × 3No other package
mm8.sibGene.LENGTHdata.frame143,366 × 3No other package
mm8.xenoRefGene.LENGTHdata.frame121,065 × 3No other package
mm9.acembly.LENGTHdata.frame173,008 × 3No other package
mm9.ccdsGene.LENGTHdata.frame17,704 × 3No other package
mm9.ensGene.LENGTHdata.frame49,039 × 3No other package
mm9.exoniphy.LENGTHdata.frame172,859 × 3No other package
mm9.geneSymbol.LENGTHdata.frame26,444 × 3No other package
mm9.geneid.LENGTHdata.frame36,708 × 3No other package
mm9.genscan.LENGTHdata.frame45,189 × 3No other package
mm9.knownGene.LENGTHdata.frame49,409 × 3No other package
mm9.nscanGene.LENGTHdata.frame21,895 × 3No other package
mm9.refGene.LENGTHdata.frame26,441 × 3No other package
mm9.sgpGene.LENGTHdata.frame35,983 × 3No other package
mm9.xenoRefGene.LENGTHdata.frame121,090 × 3No other package
monDom1.genscan.LENGTHdata.frame41,090 × 3No other package
monDom4.ensGene.LENGTHdata.frame33,878 × 3No other package
monDom4.geneSymbol.LENGTHdata.frame393 × 3No other package
monDom4.genscan.LENGTHdata.frame35,103 × 3No other package
monDom4.nscanGene.LENGTHdata.frame20,040 × 3No other package
monDom4.refGene.LENGTHdata.frame393 × 3No other package
monDom4.xenoRefGene.LENGTHdata.frame210,659 × 3No other package
monDom5.ensGene.LENGTHdata.frame34,745 × 3No other package
monDom5.geneSymbol.LENGTHdata.frame392 × 3No other package
monDom5.genscan.LENGTHdata.frame32,431 × 3No other package
monDom5.nscanGene.LENGTHdata.frame45,946 × 3No other package
monDom5.refGene.LENGTHdata.frame392 × 3No other package
monDom5.xenoRefGene.LENGTHdata.frame210,255 × 3No other package
ornAna1.ensGene.LENGTHdata.frame30,492 × 3No other package
ornAna1.geneSymbol.LENGTHdata.frame26 × 3No other package
ornAna1.refGene.LENGTHdata.frame26 × 3No other package
ornAna1.xenoRefGene.LENGTHdata.frame205,525 × 3No other package
oryLat2.ensGene.LENGTHdata.frame25,231 × 3No other package
oryLat2.geneSymbol.LENGTHdata.frame513 × 3No other package
oryLat2.refGene.LENGTHdata.frame513 × 3No other package
oryLat2.xenoRefGene.LENGTHdata.frame177,756 × 3No other package
panTro1.ensGene.LENGTHdata.frame38,822 × 3No other package
panTro1.geneid.LENGTHdata.frame32,432 × 3No other package
panTro1.genscan.LENGTHdata.frame41,471 × 3No other package
panTro1.xenoRefGene.LENGTHdata.frame39,769 × 3No other package
panTro2.ensGene.LENGTHdata.frame40,215 × 3No other package
panTro2.geneSymbol.LENGTHdata.frame34,565 × 3No other package
panTro2.genscan.LENGTHdata.frame42,844 × 3No other package
panTro2.nscanGene.LENGTHdata.frame22,251 × 3No other package
panTro2.refGene.LENGTHdata.frame34,561 × 3No other package
panTro2.xenoRefGene.LENGTHdata.frame174,474 × 3No other package
petMar1.xenoRefGene.LENGTHdata.frame93,352 × 3No other package
ponAbe2.ensGene.LENGTHdata.frame30,230 × 3No other package
ponAbe2.geneSymbol.LENGTHdata.frame3,461 × 3No other package
ponAbe2.genscan.LENGTHdata.frame42,190 × 3No other package
ponAbe2.nscanGene.LENGTHdata.frame23,499 × 3No other package
ponAbe2.refGene.LENGTHdata.frame3,461 × 3No other package
ponAbe2.xenoRefGene.LENGTHdata.frame221,549 × 3No other package
priPac1.xenoRefGene.LENGTHdata.frame128,539 × 3No other package
rheMac2.ensGene.LENGTHdata.frame41,617 × 3No other package
rheMac2.geneSymbol.LENGTHdata.frame937 × 3No other package
rheMac2.geneid.LENGTHdata.frame30,202 × 3No other package
rheMac2.nscanGene.LENGTHdata.frame22,003 × 3No other package
rheMac2.refGene.LENGTHdata.frame937 × 3No other package
rheMac2.sgpGene.LENGTHdata.frame31,416 × 3No other package
rheMac2.xenoRefGene.LENGTHdata.frame281,028 × 3No other package
rn3.ensGene.LENGTHdata.frame28,545 × 3No other package
rn3.geneSymbol.LENGTHdata.frame16,326 × 3No other package
rn3.geneid.LENGTHdata.frame37,571 × 3No other package
rn3.genscan.LENGTHdata.frame46,474 × 3No other package
rn3.knownGene.LENGTHdata.frame8,348 × 3No other package
rn3.nscanGene.LENGTHdata.frame20,120 × 3No other package
rn3.refGene.LENGTHdata.frame16,302 × 3No other package
rn3.sgpGene.LENGTHdata.frame43,736 × 3No other package
rn3.xenoRefGene.LENGTHdata.frame185,163 × 3No other package
rn4.ensGene.LENGTHdata.frame38,145 × 3No other package
rn4.geneSymbol.LENGTHdata.frame16,302 × 3No other package
rn4.geneid.LENGTHdata.frame38,143 × 3No other package
rn4.genscan.LENGTHdata.frame46,393 × 3No other package
rn4.knownGene.LENGTHdata.frame8,202 × 3No other package
rn4.nscanGene.LENGTHdata.frame22,281 × 3No other package
rn4.refGene.LENGTHdata.frame16,278 × 3No other package
rn4.sgpGene.LENGTHdata.frame36,569 × 3No other package
rn4.xenoRefGene.LENGTHdata.frame193,523 × 3No other package
sacCer1.ensGene.LENGTHdata.frame7,120 × 3No other package
sacCer2.ensGene.LENGTHdata.frame7,124 × 3No other package
strPur1.geneSymbol.LENGTHdata.frame827 × 3No other package
strPur1.genscan.LENGTHdata.frame91,683 × 3No other package
strPur1.refGene.LENGTHdata.frame827 × 3No other package
strPur1.xenoRefGene.LENGTHdata.frame285,590 × 3No other package
strPur2.geneSymbol.LENGTHdata.frame561 × 3No other package
strPur2.genscan.LENGTHdata.frame69,740 × 3No other package
strPur2.refGene.LENGTHdata.frame561 × 3No other package
strPur2.xenoRefGene.LENGTHdata.frame229,113 × 3No other package
taeGut1.ensGene.LENGTHdata.frame19,163 × 3No other package
taeGut1.geneSymbol.LENGTHdata.frame79 × 3No other package
taeGut1.genscan.LENGTHdata.frame21,680 × 3No other package
taeGut1.nscanGene.LENGTHdata.frame9,908 × 3No other package
taeGut1.refGene.LENGTHdata.frame79 × 3No other package
taeGut1.xenoRefGene.LENGTHdata.frame152,765 × 3No other package
tetNig1.ensGene.LENGTHdata.frame28,639 × 3No other package
tetNig1.geneid.LENGTHdata.frame26,924 × 3No other package
tetNig1.genscan.LENGTHdata.frame28,060 × 3No other package
tetNig1.nscanGene.LENGTHdata.frame30,161 × 3No other package
tetNig2.ensGene.LENGTHdata.frame23,946 × 3No other package
xenTro1.genscan.LENGTHdata.frame59,879 × 3No other package
xenTro2.ensGene.LENGTHdata.frame28,704 × 3No other package
xenTro2.geneSymbol.LENGTHdata.frame9,715 × 3No other package
xenTro2.genscan.LENGTHdata.frame54,063 × 3No other package
xenTro2.refGene.LENGTHdata.frame9,715 × 3No other package

All of geneLenDataBase's data objects

Topics

ExperimentData
ExperimentData › SpecimenSource › Genome
Maintainer
Federico Marini

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (3)

Bioconductor (3)

goseq PathwaySplice SMITE

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("geneLenDataBase")
Marini, F., Davidson, N., & Young, M. (2026). geneLenDataBase: Lengths of mRNA transcripts for a number of genomes (Version 1.48.0) [Computer software]. https://bioconductor.org/packages/geneLenDataBase

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for geneLenDataBase version 1.48.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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