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Topic: ExperimentData or DataRepresentation or DNAMethylation

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Release: Release 3.15 (2022)

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632 packages on Bioconductor tagged ExperimentData or DataRepresentation or DNAMethylation, most distinct IPs first

ExperimentData, DataRepresentation and DNAMethylation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
S4Vectors
Foundation of vector-like and list-like containers in BioconductorHervé Pagès		Hervé Pagèssoftware16 Sep 202674,7547
IRanges
Foundation of integer range manipulation in BioconductorHervé Pagès		Hervé Pagèssoftware28 Apr 202668,8178
XVector
Foundation of external vector representation and manipulation in BioconductorHervé Pagès		Hervé Pagèssoftware28 Apr 202663,83710
Biostrings
Efficient manipulation of biological stringsHervé Pagès		Hervé Pagèssoftware2 Sep 202658,96214
DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasetsHervé Pagès		Hervé Pagèssoftware26 May 202657,50020
GenomicRanges
Representation and manipulation of genomic intervalsHervé Pagès		Hervé Pagèssoftware28 Apr 202656,97410
GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming styleHervé Pagès		Hervé Pagèssoftware28 Apr 202637,35620
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
treeio
Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu		Guangchuang Yusoftware30 Apr 202631,96639
SingleCellExperiment
S4 Classes for Single Cell DataDavide Risso		Davide Rissosoftware28 Apr 202624,48325
beachmat
Compiling Bioconductor to Handle Each Matrix TypeAaron Lun		Aaron Lunsoftware28 Apr 202622,12123
sparseMatrixStats
Summary Statistics for Rows and Columns of Sparse MatricesConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 202621,50011
HDF5Array
HDF5 datasets as array-like objects in RHervé Pagès		Hervé Pagèssoftware28 Apr 202620,53728
DelayedMatrixStats
Functions that Apply to Rows and Columns of 'DelayedMatrix' ObjectsPeter Hickey		Peter Hickeysoftware28 Apr 202619,96923
ScaledMatrix
Creating a DelayedMatrix of Scaled and Centered ValuesAaron Lun		Aaron Lunsoftware28 Apr 202617,72521
BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès		Hervé Pagèssoftware28 Apr 202614,37557
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
SpatialExperiment
S4 Class for Spatially Resolved -omics DataDario Righelli		Dario Righellisoftware28 Apr 202610,71864
MultiAssayExperiment
Software for the integration of multi-omics experiments in BioconductorMarcel Ramos		Marcel Ramossoftware28 Apr 20269,52345
TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva		Tiago Chedraoui Silvasoftware28 Apr 20266,750103
TCGAbiolinksGUI.data
Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 20265,7580
celldex
Index of Reference Cell Type DatasetsAaron Lun		Aaron Lunexperiment5 May 20265,71795
ResidualMatrix
Creating a DelayedMatrix of Regression ResidualsAaron Lun		Aaron Lunsoftware28 Apr 20265,55921
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqCole Trapnell		Cole Trapnellsoftware28 Apr 20264,48574
zellkonverter
Conversion Between scRNA-seq ObjectsLuke Zappia		Luke Zappiasoftware29 Apr 20264,27841
bumphunter
Bump HunterTamilselvi Guharaj		Tamilselvi Guharajsoftware28 Apr 20264,26883
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1717
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
cytolib
C++ infrastructure for representing and interacting with the gated cytometry dataMike Jiang		Mike Jiangsoftware28 Apr 20263,8208