ELViS

Description

Base-resolution copy number analysis of viral genome. Utilizes base-resolution read depth data over viral genome to find copy number segments with two-dimensional segmentation approach. Provides publish-ready figures, including histograms of read depths, coverage line plots over viral genome annotated with copy number change events and viral genes, and heatmaps showing multiple types of data with integrative clustering of samples.

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Code

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Topics

People

• Jin-Young Lee author maintainer cph
• Hyo Young Choi author cph
• D. Neil Hayes author fnd cph
• Katherine A. Hoadley author
• Jeremiah R. Holt contributor
• Xiaobei Zhao contributor