Davide Risso

1 package On CRAN since Feb 2025 (1 year) · last active 1 year ago On Bioconductor since Nov 2011 (14 years) · last active 3 months ago 0000-0001-8508-5012

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sgdGMF

397

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sgdGMF updated v1.0.1 May 17, 2025

Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent

sgdGMF new v1.0 Feb 12, 2025

Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent

Contributions

1 package

Package	Title	Downloads	Version
sgdGMF	Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent	397	1.0.1

Bioconductor Packages

22 packages

Package	Title	Category	Version
BatChef Bioc	Single-cell RNA-seq batch effects correction methods interface	software	1.0.2
DEScan2 Bioc	Differential Enrichment Scan 2	software	1.32.0
EDASeq Bioc	Exploratory Data Analysis and Normalization for RNA-Seq	software	2.46.0
NewWave Bioc	Negative binomial model for scRNA-seq	software	1.21.0
PsiNorm Bioc removed	Scaling normalization based on the Pareto distribution		0.99.5
RUVSeq Bioc	Remove Unwanted Variation from RNA-Seq Data	software	1.46.0
SingleCellExperiment Bioc	S4 Classes for Single Cell Data	software	1.34.0
SpaceTrooper Bioc	SpaceTrooper performs Quality Control analysis of Image-Based spatial	software	1.2.0
SpatialExperiment Bioc	S4 Class for Spatially Resolved -omics Data	software	1.22.0
TENxPBMCData Bioc	PBMC data from 10X Genomics	experiment	1.30.0
awst Bioc	Asymmetric Within-Sample Transformation	software	1.20.0
benchdamic Bioc	Benchmark of differential abundance methods on microbiome data	software	1.18.0
clusterExperiment Bioc	Compare Clusterings for Single-Cell Sequencing	software	2.32.0
imageTCGA Bioc	TCGA Diagnostic Image Database Explorer	software	1.4.0
mbkmeans Bioc	Mini-batch K-means Clustering for Single-Cell RNA-seq	software	1.28.0
muscat Bioc	Multi-sample multi-group scRNA-seq data analysis tools	software	1.26.0
omicsGMF Bioc	Dimensionality reduction of (single-cell) omics data in R using omicsGMF	software	1.2.0
scRNAseq Bioc	Collection of Public Single-Cell RNA-Seq Datasets	experiment	2.26.0
scone Bioc	Single Cell Overview of Normalized Expression data	software	1.36.0
scry Bioc	Small-Count Analysis Methods for High-Dimensional Data	software	1.24.0
slingshot Bioc	Tools for ordering single-cell sequencing	software	2.20.0
zinbwave Bioc	Zero-Inflated Negative Binomial Model for RNA-Seq Data	software	1.34.0