scDblFinder
Bioc currentscDblFinder
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
The scDblFinder package gathers various methods for the detection and handling of doublets/multiplets in single-cell sequencing data (i.e. multiple cells captured within the same droplet or reaction volume). It includes methods formerly found in the scran package, the new fast and comprehensive scDblFinder method, and a reimplementation of the Amulet detection method for single-cell ATAC-seq.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
74 23 exported
Complexity
8 avg / 89 max
Call network
74 nodes / 96 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,856
Files
67
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
26
Internal functions
51
Testing & CI
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2020-03-31
Latest release
2026-06-26
Avg cadence
182 days
Cold removal rate
100%
Dep drift
22
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- References docs
- 12%
Topics
Depended on by (4)
Bioconductor (4)
People
- Pierre-Luc Germain maintainer author
- Aaron Lun contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("scDblFinder")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.