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methylKit

Bioc current

DNA methylation analysis from high-throughput bisulfite sequencing results

v1.38.0 · software · Artistic-2.0
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Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Methylation calling can be performed directly from Bismark aligned BAM files.

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Topics

Software › AssayDomain › DNAMethylation
Software › Technology › Sequencing
Software › Technology › Sequencing › MethylSeq

Depended on by (5)

Bioconductor (5)

deconvR methInheritSim methylInheritance ComBatMet MethCP

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Altuna Akalin