methylRawList.obj
Example methylRawList object.
Bundled with methylKit · exported, loads via data()
Class
methylRawList
Elements
4
Missing
0
Format
rda · gzip
version 3 · 81 KB
File
data/methylKit.RData
Fingerprint
22d452f6
Structure
Distinct
4
Nesting depth
2
Element length
7 – 7
Total length
28
Elements
Element
Type
Distinct
Missing
Summary
[[1]]list60nested
Element length
1,904 – 1,904
Total length
13,328
What is inside it
Element
Type
Distinct
Missing
Summary
chr
character
1
0
5 characters
startinteger1,90409764513 – 19943695mean 1.48e+7
Min.
9764513
1st Qu.
1.39991e+7
Median
14568212
Mean
1.47985e+7
3rd Qu.
1.78075e+7
Max.
19943695
Std. dev
2.83644e+6
Skewness
-0.4251
Kurtosis
-0.8268
endinteger1,90409764513 – 19943695mean 1.48e+7
Min.
9764513
1st Qu.
1.39991e+7
Median
14568212
Mean
1.47985e+7
3rd Qu.
1.78075e+7
Max.
19943695
Std. dev
2.83644e+6
Skewness
-0.4251
Kurtosis
-0.8268
strand
character
2
0
1 characters
coverageinteger210010 – 818mean 62.15
Min.
10
1st Qu.
16
Median
43
Mean
62.1455
3rd Qu.
86
Max.
818
Std. dev
65.8926
Skewness
3.207
Kurtosis
18.69
Outliers
650 low · 65 high
numCsinteger18900 – 686mean 26.33
Min.
0
1st Qu.
0
Median
10
Mean
26.3256
3rd Qu.
26
Max.
686
Std. dev
52.0535
Skewness
4.639
Kurtosis
32.22
Zeros
647
Outliers
2210 low · 221 high
numTsinteger17100 – 300mean 35.81
Min.
0
1st Qu.
2
Median
13
Mean
35.8078
3rd Qu.
61
Max.
300
Std. dev
44.4708
Skewness
1.433
Kurtosis
1.701
Zeros
247
Outliers
470 low · 47 high
[[2]]list60nested
Element length
2,006 – 2,006
Total length
14,042
What is inside it
Element
Type
Distinct
Missing
Summary
chr
character
1
0
5 characters
startinteger2,00609764513 – 19943695mean 1.416e+7
Min.
9764513
1st Qu.
1.01702e+7
Median
1.43587e+7
Mean
1.41563e+7
3rd Qu.
16031072
Max.
19943695
Std. dev
3.00875e+6
Skewness
-0.1116
Kurtosis
-1.154
endinteger2,00609764513 – 19943695mean 1.416e+7
Min.
9764513
1st Qu.
1.01702e+7
Median
1.43587e+7
Mean
1.41563e+7
3rd Qu.
16031072
Max.
19943695
Std. dev
3.00875e+6
Skewness
-0.1116
Kurtosis
-1.154
strand
character
2
0
1 characters
coverageinteger132010 – 630mean 34.45
Min.
10
1st Qu.
16
Median
26
Mean
34.4516
3rd Qu.
39
Max.
630
Std. dev
41.1296
Skewness
6.787
Kurtosis
64.45
Outliers
1220 low · 122 high
numCsinteger12100 – 600mean 21.65
Min.
0
1st Qu.
4
Median
14
Mean
21.6525
3rd Qu.
27
Max.
600
Std. dev
36.1543
Skewness
7.412
Kurtosis
79.77
Zeros
413
Outliers
970 low · 97 high
numTsinteger9200 – 298mean 12.79
Min.
0
1st Qu.
1
Median
4
Mean
12.7911
3rd Qu.
17
Max.
298
Std. dev
19.8295
Skewness
4.134
Kurtosis
34.55
Zeros
313
Outliers
1380 low · 138 high
[[3]]list60nested
Element length
2,377 – 2,377
Total length
16,639
What is inside it
Element
Type
Distinct
Missing
Summary
chr
character
1
0
5 characters
startinteger2,37709826907 – 19943695mean 1.496e+7
Min.
9826907
1st Qu.
13999276
Median
14677277
Mean
1.49606e+7
3rd Qu.
17764900
Max.
19943695
Std. dev
2.72017e+6
Skewness
-0.4545
Kurtosis
-0.5858
endinteger2,37709826907 – 19943695mean 1.496e+7
Min.
9826907
1st Qu.
13999276
Median
14677277
Mean
1.49606e+7
3rd Qu.
17764900
Max.
19943695
Std. dev
2.72017e+6
Skewness
-0.4545
Kurtosis
-0.5858
strand
character
2
0
1 characters
coverageinteger142010 – 612mean 31.45
Min.
10
1st Qu.
16
Median
23
Mean
31.4468
3rd Qu.
33
Max.
612
Std. dev
34.2309
Skewness
6.494
Kurtosis
68.4
Outliers
2300 low · 230 high
numCsinteger13800 – 608mean 19.93
Min.
0
1st Qu.
0
Median
13
Mean
19.926
3rd Qu.
25
Max.
608
Std. dev
31.8683
Skewness
6.226
Kurtosis
72.74
Zeros
718
Outliers
1460 low · 146 high
numTsinteger8000 – 158mean 11.52
Min.
0
1st Qu.
0
Median
5
Mean
11.5166
3rd Qu.
18
Max.
158
Std. dev
15.3326
Skewness
2.42
Kurtosis
10.38
Zeros
690
Outliers
780 low · 78 high
[[4]]list60nested
Element length
1,697 – 1,697
Total length
11,879
What is inside it
Element
Type
Distinct
Missing
Summary
chr
character
1
0
5 characters
startinteger1,69709736774 – 19992941mean 1.4e+7
Min.
9736774
1st Qu.
10166924
Median
14358181
Mean
1.4003e+7
3rd Qu.
16024576
Max.
19992941
Std. dev
3.08032e+6
Skewness
-0.0359
Kurtosis
-1.274
endinteger1,69709736774 – 19992941mean 1.4e+7
Min.
9736774
1st Qu.
10166924
Median
14358181
Mean
1.4003e+7
3rd Qu.
16024576
Max.
19992941
Std. dev
3.08032e+6
Skewness
-0.0359
Kurtosis
-1.274
strand
character
2
0
1 characters
coverageinteger85010 – 431mean 20.73
Min.
10
1st Qu.
11
Median
15
Mean
20.7325
3rd Qu.
20
Max.
431
Std. dev
29.7627
Skewness
9.232
Kurtosis
102.8
Outliers
1360 low · 136 high
numCsinteger8500 – 341mean 12.43
Min.
0
1st Qu.
0
Median
10
Mean
12.429
3rd Qu.
14
Max.
341
Std. dev
22.5515
Skewness
8.714
Kurtosis
103
Zeros
434
Outliers
780 low · 78 high
numTsinteger5500 – 418mean 8.299
Min.
0
1st Qu.
0
Median
5
Mean
8.2988
3rd Qu.
12
Max.
418
Std. dev
17.0276
Skewness
13.06
Kurtosis
253.1
Zeros
443
Outliers
330 low · 33 high
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| treatment | numeric | 4 | 1, 1, 0, 0 |
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.22 | 2025-10-29 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.21 | 2025-04-15 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.20 | 2025-02-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.19 | 2024-04-30 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.18 | 2023-10-24 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.17 | 2023-04-25 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.16 | 2022-11-01 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.15 | 2022-04-26 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.14 | 2021-10-26 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.13 | 2021-05-19 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.12 | 2021-01-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.11 | 2020-05-20 | – | Data changed Class, Type, Missing and Distinct unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.10 | 2019-10-29 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.9 | 2019-05-02 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.8 | 2018-12-11 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.7 | 2018-10-11 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.6 | 2018-01-22 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.5 | 2017-08-24 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.4 | 2016-10-17 | – | – | rda · gzip version 2 · 89 KB | exact |
Class is what R calls the object. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.