test1.myCpG
Bundled with methylKit · ships in inst/extdata, read by path with system.file()
Class
data.frame
Dimensions
1,904 × 7
Missing
0
Format
tsv · none
87 KB
File
inst/extdata/test1.myCpG.txt
Fingerprint
f0ec6340
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
chrBase
character
1,904
0
13 – 14 characters
chr
character
1
0
5 characters
baseinteger1,90409764513 – 19943695mean 1.48e+7
Min.
9764513
1st Qu.
1.39991e+7
Median
14568212
Mean
1.47985e+7
3rd Qu.
1.78075e+7
Max.
19943695
Std. dev
2.83644e+6
Skewness
-0.4251
Kurtosis
-0.8268
strand
character
2
0
1 characters
coverageinteger210010 – 818mean 62.15
Min.
10
1st Qu.
16
Median
43
Mean
62.1455
3rd Qu.
86
Max.
818
Std. dev
65.8926
Skewness
3.207
Kurtosis
18.69
Outliers
650 low · 65 high
freqCnumeric54600 – 100mean 48.49
Min.
0
1st Qu.
0
Median
58.15
Mean
48.4871
3rd Qu.
91.315
Max.
100
Std. dev
42.1092
Skewness
-0.0773
Kurtosis
-1.767
Zeros
647
freqTnumeric54600 – 100mean 51.5
Min.
0
1st Qu.
8.6075
Median
41.85
Mean
51.5013
3rd Qu.
100
Max.
100
Std. dev
42.1124
Skewness
0.0773
Kurtosis
-1.767
Zeros
247
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.22 | 2025-10-29 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.21 | 2025-04-15 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.20 | 2025-02-28 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.19 | 2024-04-30 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.18 | 2023-10-24 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.17 | 2023-04-25 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.16 | 2022-11-01 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.15 | 2022-04-26 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.14 | 2021-10-26 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.13 | 2021-05-19 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.12 | 2021-01-28 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.11 | 2020-05-20 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.10 | 2019-10-29 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.9 | 2019-05-02 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.8 | 2018-12-11 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.7 | 2018-10-11 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.6 | 2018-01-22 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.5 | 2017-08-24 | 1,904 × 7 | Unchanged | tsv · none 87 KB | degraded |
| 3.4 | 2016-10-17 | 1,904 × 7 | – | tsv · none 87 KB | degraded |