control1.myCpG
Bundled with methylKit · ships in inst/extdata, read by path with system.file()
Class
data.frame
Dimensions
2,377 × 7
Missing
0
Format
tsv · none
109 KB
File
inst/extdata/control1.myCpG.txt
Fingerprint
17c95edc
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
chrBase
character
2,377
0
13 – 14 characters
chr
character
1
0
5 characters
baseinteger2,37709826907 – 19943695mean 1.496e+7
Min.
9826907
1st Qu.
13999276
Median
14677277
Mean
1.49606e+7
3rd Qu.
17764900
Max.
19943695
Std. dev
2.72017e+6
Skewness
-0.4545
Kurtosis
-0.5858
strand
character
2
0
1 characters
coverageinteger142010 – 612mean 31.45
Min.
10
1st Qu.
16
Median
23
Mean
31.4468
3rd Qu.
33
Max.
612
Std. dev
34.2309
Skewness
6.494
Kurtosis
68.4
Outliers
2300 low · 230 high
freqCnumeric42200 – 100mean 58.52
Min.
0
1st Qu.
0
Median
82.76
Mean
58.5224
3rd Qu.
100
Max.
100
Std. dev
43.6251
Skewness
-0.4352
Kurtosis
-1.641
Zeros
718
freqTnumeric42100 – 100mean 41.46
Min.
0
1st Qu.
0
Median
16.67
Mean
41.4601
3rd Qu.
100
Max.
100
Std. dev
43.628
Skewness
0.4353
Kurtosis
-1.641
Zeros
690
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.22 | 2025-10-29 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.21 | 2025-04-15 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.20 | 2025-02-28 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.19 | 2024-04-30 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.18 | 2023-10-24 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.17 | 2023-04-25 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.16 | 2022-11-01 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.15 | 2022-04-26 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.14 | 2021-10-26 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.13 | 2021-05-19 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.12 | 2021-01-28 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.11 | 2020-05-20 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.10 | 2019-10-29 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.9 | 2019-05-02 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.8 | 2018-12-11 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.7 | 2018-10-11 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.6 | 2018-01-22 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.5 | 2017-08-24 | 2,377 × 7 | Unchanged | tsv · none 109 KB | degraded |
| 3.4 | 2016-10-17 | 2,377 × 7 | – | tsv · none 109 KB | degraded |