test2.myCpG
Bundled with methylKit · ships in inst/extdata, read by path with system.file()
Class
data.frame
Dimensions
2,006 × 7
Missing
0
Format
tsv · none
91 KB
File
inst/extdata/test2.myCpG.txt
Fingerprint
fec81558
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
chrBase
character
2,006
0
13 – 14 characters
chr
character
1
0
5 characters
baseinteger2,00609764513 – 19943695mean 1.416e+7
Min.
9764513
1st Qu.
1.01702e+7
Median
1.43587e+7
Mean
1.41563e+7
3rd Qu.
16031072
Max.
19943695
Std. dev
3.00875e+6
Skewness
-0.1116
Kurtosis
-1.154
strand
character
2
0
1 characters
coverageinteger132010 – 630mean 34.45
Min.
10
1st Qu.
16
Median
26
Mean
34.4516
3rd Qu.
39
Max.
630
Std. dev
41.1296
Skewness
6.787
Kurtosis
64.45
Outliers
1220 low · 122 high
freqCnumeric45200 – 100mean 63.17
Min.
0
1st Qu.
20
Median
82.785
Mean
63.1686
3rd Qu.
94.74
Max.
100
Std. dev
38.9867
Skewness
-0.7407
Kurtosis
-1.144
Zeros
413
freqTnumeric45300 – 100mean 36.81
Min.
0
1st Qu.
5.26
Median
17.08
Mean
36.8091
3rd Qu.
80
Max.
100
Std. dev
38.9889
Skewness
0.7408
Kurtosis
-1.144
Zeros
313
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.22 | 2025-10-29 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.21 | 2025-04-15 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.20 | 2025-02-28 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.19 | 2024-04-30 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.18 | 2023-10-24 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.17 | 2023-04-25 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.16 | 2022-11-01 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.15 | 2022-04-26 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.14 | 2021-10-26 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.13 | 2021-05-19 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.12 | 2021-01-28 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.11 | 2020-05-20 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.10 | 2019-10-29 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.9 | 2019-05-02 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.8 | 2018-12-11 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.7 | 2018-10-11 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.6 | 2018-01-22 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.5 | 2017-08-24 | 2,006 × 7 | Unchanged | tsv · none 91 KB | degraded |
| 3.4 | 2016-10-17 | 2,006 × 7 | – | tsv · none 91 KB | degraded |