methylDiff.obj
Example methylKit objects.
Bundled with methylKit · exported, loads via data()
Class
methylDiff
Elements
7
Missing
0
Format
rda · gzip
version 3 · 81 KB
File
data/methylKit.RData
Fingerprint
a97590ec
Structure
Distinct
6
Element length
963 – 963
Total length
6,741
Elements
Element
Type
Distinct
Missing
Summary
chr
character
1
0
5 characters
startinteger96309853296 – 19943695mean 1.446e+7
Min.
9853296
1st Qu.
1.01923e+7
Median
14370169
Mean
1.44643e+7
3rd Qu.
17214210
Max.
19943695
Std. dev
2.96539e+6
Skewness
-0.2519
Kurtosis
-1.072
Order
ascending
endinteger96309853296 – 19943695mean 1.446e+7
Min.
9853296
1st Qu.
1.01923e+7
Median
14370169
Mean
1.44643e+7
3rd Qu.
17214210
Max.
19943695
Std. dev
2.96539e+6
Skewness
-0.2519
Kurtosis
-1.072
Order
ascending
strand
character
2
0
1 characters
pvaluenumeric70606.903e-36 – 1mean 0.412
Min.
6.903e-36
1st Qu.
0.0054
Median
0.2438
Mean
0.412
3rd Qu.
1
Max.
1
Std. dev
0.4198
Skewness
0.4309
Kurtosis
-1.55
qvaluenumeric53203.9365e-33 – 0.5922mean 0.2971
Min.
3.9365e-33
1st Qu.
0.0128
Median
0.2884
Mean
0.2971
3rd Qu.
0.5922
Max.
0.5922
Std. dev
0.2539
Skewness
0.0312
Kurtosis
-1.754
meth.diffnumeric6860-73.6202 – 65.5803mean 0.5232
Min.
-73.6202
1st Qu.
-4.3992
Median
0
Mean
0.5232
3rd Qu.
3.5672
Max.
65.5803
Std. dev
17.1391
Skewness
0.302
Kurtosis
2.937
Zeros
255
Outliers
21398 low · 115 high
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| .S3Class | character | 1 | data.frame |
| assembly | character | 1 | hg18 |
| context | character | 1 | CpG |
| destranded | logical | 1 | FALSE |
| resolution | character | 1 | base |
| sample.ids | character | 4 | test1, test2, ctrl1, ctrl2 |
| treatment | numeric | 4 | 1, 1, 0, 0 |
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.22 | 2025-10-29 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.21 | 2025-04-15 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.20 | 2025-02-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.19 | 2024-04-30 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.18 | 2023-10-24 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.17 | 2023-04-25 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.16 | 2022-11-01 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.15 | 2022-04-26 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.14 | 2021-10-26 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.13 | 2021-05-19 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.12 | 2021-01-28 | – | Unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.11 | 2020-05-20 | – | Data changed Class, Type, Missing and Distinct unchanged | rda · gzip version 3 · 81 KB | exact |
| 3.10 | 2019-10-29 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.9 | 2019-05-02 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.8 | 2018-12-11 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.7 | 2018-10-11 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.6 | 2018-01-22 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.5 | 2017-08-24 | – | Unchanged | rda · gzip version 2 · 89 KB | exact |
| 3.4 | 2016-10-17 | – | – | rda · gzip version 2 · 89 KB | exact |
Class is what R calls the object. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.