control2.myCpG
Bundled with methylKit · ships in inst/extdata, read by path with system.file()
Class
data.frame
Dimensions
1,697 × 7
Missing
0
Format
tsv · none
78 KB
File
inst/extdata/control2.myCpG.txt
Fingerprint
acd7dc98
About this object
A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
chrBase
character
1,697
0
13 – 14 characters
chr
character
1
0
5 characters
baseinteger1,69709736774 – 19992941mean 1.4e+7
Min.
9736774
1st Qu.
10166924
Median
14358181
Mean
1.4003e+7
3rd Qu.
16024576
Max.
19992941
Std. dev
3.08032e+6
Skewness
-0.0359
Kurtosis
-1.274
strand
character
2
0
1 characters
coverageinteger85010 – 431mean 20.73
Min.
10
1st Qu.
11
Median
15
Mean
20.7325
3rd Qu.
20
Max.
431
Std. dev
29.7627
Skewness
9.232
Kurtosis
102.8
Outliers
1360 low · 136 high
freqCnumeric25600 – 100mean 58.21
Min.
0
1st Qu.
0
Median
74.14
Mean
58.2121
3rd Qu.
100
Max.
100
Std. dev
41.0186
Skewness
-0.4402
Kurtosis
-1.512
Zeros
434
freqTnumeric25600 – 100mean 41.76
Min.
0
1st Qu.
0
Median
25.81
Mean
41.7633
3rd Qu.
100
Max.
100
Std. dev
41.0337
Skewness
0.44
Kurtosis
-1.512
Zeros
443
Same structure in 3 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.22 | 2025-10-29 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.21 | 2025-04-15 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.20 | 2025-02-28 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.19 | 2024-04-30 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.18 | 2023-10-24 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.17 | 2023-04-25 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.16 | 2022-11-01 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.15 | 2022-04-26 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.14 | 2021-10-26 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.13 | 2021-05-19 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.12 | 2021-01-28 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.11 | 2020-05-20 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.10 | 2019-10-29 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.9 | 2019-05-02 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.8 | 2018-12-11 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.7 | 2018-10-11 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.6 | 2018-01-22 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.5 | 2017-08-24 | 1,697 × 7 | Unchanged | tsv · none 78 KB | degraded |
| 3.4 | 2016-10-17 | 1,697 × 7 | – | tsv · none 78 KB | degraded |