methylInheritance
Bioc currentPermutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
25 9 exported
Complexity
7.2 avg / 38 max
Call network
25 nodes / 21 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,489
Files
85
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
16
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["github-actions","travis"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-04-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 0%
Datasets
| Name | Class | Rows × Cols | Also in |
|---|---|---|---|
| SITES_observed_results | list | – | No other package |
| SITES_permutation_1 | list | – | No other package |
| SITES_permutation_2 | list | – | No other package |
| SITES_permutation_3 | list | – | No other package |
| TILES_observed_results | list | – | No other package |
| TILES_permutation_1 | list | – | No other package |
| TILES_permutation_2 | list | – | No other package |
| TILES_permutation_3 | list | – | No other package |
| demoForTransgenerationalAnalysis | list | – | No other package |
| methylInheritanceResults | methylInheritanceAllResults | – | No other package |
| methylObj_001 | list | – | No other package |
| permutationResultsForSites | list | – | No other package |
| resultsForTransgenerationalAnalysis | methylInheritanceAllResults | – | No other package |
| samplesForTransgenerationalAnalysis | list | – | No other package |
Topics
Depended on by (1)
Bioconductor (1)
People
- Astrid Deschênes maintainer author
- Pascal Belleau author
- Arnaud Droit author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("methylInheritance")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
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