genefu
Bioc currentComputation of Gene Expression-Based Signatures in Breast Cancer
Release Lineage
Entered 2.8 · Apr 14, 2011
Current · Requires R 4.6
Description
This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
51 50 exported
Complexity
8.1 avg / 33 max
Call network
51 nodes / 44 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,724
Files
196
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
50
Internal functions
0
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
31
First release
2011-05-19
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
10
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 82%
Topics
Depended on by (10)
People
- Benjamin Haibe-Kains author maintainer
- Aleix Prat author
- Christopher Eeles contributor
- Deena M.A. Gendoo author
- Jermiah Joseph contributor
- Joel S Parker author
- Laia Pare author
- Markus S. Schroeder author
- Natchar Ratanasirigulchai author
- Nikta Feizi contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("genefu")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.