sigOvcTCGA

sigOvcTCGA dataset

Bundled with genefu · exported, loads via data()

Class

data.frame

Dimensions

193 × 14

Missing

Format

rda · xz

version 2 · 13 KB

File

data/sigOvcTCGA.rda

Fingerprint

d7995ebc

Source

http://jnci.oxfordjournals.org/cgi/content/full/98/4/262/DC1

About this object

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes

Row names

Yes

Columns

Column

Type

Distinct

Missing

Summary

probe

factor

193

100110083110141102061102111102401+187 more

Levels

193

Used

193

Rows per level, the 50 commonest of 193

10011008311014110206110211110240110253110287110298110313110385110488110537110550110563110588110615110904111119111144111148111226111961131146511471791157567116111161291116722711760117621191011915851194212064120812118121841227941228381228391230511230781232111232951233281233811236121236571

entrezgene

integer

192

13 – 752014mean 3.359e+4

Min.

1st Qu.

4704.5

Median

10225.5

Mean

33585

3rd Qu.

52341

Max.

752014

Std. dev

68210.1

Skewness

7.039

Kurtosis

65.22

Outliers

70 low · 7 high

hgnc_symbol

character

187

3 – 9 characters

ensembl_gene_id

character

191

15 characters

unigene

character

178

6 – 9 characters

description

character

190

37 – 140 characters

chromosome_name

character

1 – 15 characters

start_position

integer

191

584441 – 220110177mean 6.082e+7

Min.

584441

1st Qu.

3.31026e+7

Median

4.31925e+7

Mean

6.0821e+7

3rd Qu.

75951781

Max.

220110177

Std. dev

4.67011e+7

Skewness

1.544

Kurtosis

1.788

Outliers

180 low · 18 high

end_position

integer

191

591042 – 220115059mean 6.088e+7

Min.

591042

1st Qu.

3.32657e+7

Median

4.32315e+7

Mean

6.0879e+7

3rd Qu.

7.59579e+7

Max.

220115059

Std. dev

4.67091e+7

Skewness

1.543

Kurtosis

1.784

Outliers

180 low · 18 high

strand

integer

-1 – 1mean -0.0312

Min.

-1

1st Qu.

-1

Median

-1

Mean

-0.0312

3rd Qu.

Max.

Std. dev

1.0021

Skewness

0.062

Kurtosis

-2.006

band

character

3 – 6 characters

Gene.set

character

4 characters

beta

numeric

193

-0.9688 – 1.9849mean 0.1409

Min.

-0.9688

1st Qu.

-0.4439

Median

0.4207

Mean

0.1409

3rd Qu.

0.6263

Max.

1.9849

Std. dev

0.6001

Skewness

-0.0286

Kurtosis

-1.187

p.value

numeric

193

0.0001 – 0.0099mean 0.0046

Min.

0.0001

1st Qu.

0.0019

Median

0.0043

Mean

0.0046

3rd Qu.

0.007

Max.

0.0099

Std. dev

0.0029

Skewness

0.1459

Kurtosis

-1.232

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.22	2025-10-29	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.21	2025-04-15	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.20	2024-10-29	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.19	2024-04-30	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.18	2023-10-24	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.17	2023-04-25	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.16	2022-11-01	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.15	2022-04-26	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.14	2021-10-26	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.13	2021-05-21	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.12	2021-01-25	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.11	2020-04-27	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.10	2020-01-31	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.9	2019-05-02	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.8	2018-10-30	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.7	2018-04-30	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.6	2018-04-10	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.5	2017-04-24	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.4	2016-10-17	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.3	2016-05-15	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.2	2015-10-13	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.1	2015-04-16	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
3.0	2014-10-13	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
2.14	2014-04-11	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
2.13	2013-10-14	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
2.12	2013-04-03	193 × 14	Unchanged	rda · xz version 2 · 13 KB	exact
2.11	2012-10-01	193 × 14	–	rda · xz version 2 · 13 KB	exact