ssp2006.scale
SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
Bundled with genefu · exported, loads via data()
Class
list
Elements
6
Missing
0
Format
rda · gzip
version 2 · 7.6 KB
File
data/ssp2006.scale.rda
Fingerprint
36d98b4c
Format documented
Yes
Source
http://www.biomedcentral.com/1471-2164/7/96
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
6
Nesting depth
2
Element length
1 – 1,530
Total length
1,537
Nested rows
306
Nested columns
3
Elements
Element
Type
Distinct
Missing
Summary
centroidsnumeric9010-3.035 – 4.092·306 × 5 matrixmean -6.536e-7
Min.
-3.035
1st Qu.
-0.2212
Median
-0.031
Mean
-6.536e-7
3rd Qu.
0.186
Max.
4.092
Std. dev
0.4692
Skewness
0.8721
Kurtosis
12.05
Zeros
2
Outliers
10336 low · 67 high
centroids.maplist20nested·306 rows nested
Element length
306 – 306
Total length
918
Nested rows
306
What is inside it
Element
Type
Distinct
Missing
Summary
probe
character
306
0
24 – 27 characters
probe.centroids
character
306
0
24 – 27 characters
EntrezGene.IDinteger2406581 – 94239mean 8721
Min.
81
1st Qu.
1474
Median
4830
Mean
8720.86
3rd Qu.
8393
Max.
94239
Std. dev
14343.7
Skewness
3.385
Kurtosis
12.07
Outliers
250 low · 25 high
Longest gap
4
method.cor
character
1
0
8 characters
method.centroids
character
1
0
4 characters
std
character
1
0
5 characters
mins
numeric
1
0
5
Every nested table has these 3 columns
- probe
- probe.centroids
- EntrezGene.ID
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 1.0.9 | 2010-08-25 | 6 elements | Unchanged | rda · gzip version 2 · 7.6 KB | exact |
| 1.0.8 | 2010-07-26 | 6 elements | – | rda · gzip version 2 · 7.6 KB | exact |