annot.expos
Gene expression, annotations and clinical data from the International Genomics Consortium
Bundled with genefu · exported, loads via data()
Class
data.frame
Dimensions
966 × 7
Missing
226
Format
rda · xz
version 3 · 2.6 MB
File
data/expos.rda
Fingerprint
0e8ba70e
Format documented
Yes
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2109
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
factor9660200039_s_at1200600_at1200618_at1200670_at1200711_s_at1200718_s_at1+22,277 more
200039_s_at1200600_at1200618_at1200670_at1200711_s_at1200718_s_at1+22,277 more
Levels
22,283
Used
966
Unused
21,317
Rows per level, the 50 commonest of 22,283
200039_s_at1200600_at1200618_at1200670_at1200711_s_at1200718_s_at1200726_at1200783_s_at1200790_at1200795_at1200803_s_at1200804_at1200810_s_at1200811_at1200824_at1200827_at1200830_at1200853_at1200874_s_at1200875_s_at1200878_at1200896_x_at1200965_s_at1201012_at1201013_s_at1201014_s_at1201030_x_at1201037_at1201041_s_at1201044_x_at1201068_s_at1201088_at1201091_s_at1201111_at1201112_s_at1201114_x_at1201160_s_at1201161_s_at1201185_at1201195_s_at1201201_at1201202_at1201277_s_at1201281_at1201288_at1201291_s_at1201292_at1201300_s_at1201326_at1201327_s_at1
integer657269 – 400451mean 2.172e+4
Min.
9
1st Qu.
3479
Median
7480
Mean
21715.9
3rd Qu.
23650
Max.
400451
Std. dev
36570.2
Skewness
4.502
Kurtosis
32.27
Outliers
1450 low · 145 high
Longest gap
4
factor65726DST6ESR16NFIB6CA125EGFR5FBLN15+11,830 more
DST6ESR16NFIB6CA125EGFR5FBLN15+11,830 more
Levels
11,836
Used
657
Unused
11,179
Rows per level, the 50 commonest of 11,836
DST6ESR16NFIB6CA125EGFR5FBLN15GTSE15BCL24DCN4IGF14JMJD2B4MAPT4MKI674MYH114NTRK24PCGF24RARA4RBMS14SIRPA4TMEM974TRIM24ABAT3ARL4C3BCL11A3BIRC53CELSR13COL14A13CSE1L3CYP2B63DPT3GATA33GPM6B3GREB13IKBKB3IL6ST3JUN3LAMA23LAPTM4B3LPIN13MCM43PLAGL13PLK43PPAP2B3RARRES13RGS53RUNX1T13SFRP13SKP1A3SMC43SNRPA13
factor63852DST6ESR16NFIB6CA125EGFR5FBLN15+11,472 more
DST6ESR16NFIB6CA125EGFR5FBLN15+11,472 more
Levels
11,478
Used
638
Unused
10,840
Rows per level, the 50 commonest of 11,478
DST6ESR16NFIB6CA125EGFR5FBLN15GTSE15BCL24DCN4IGF14JMJD2B4MAPT4MKI674MYH114NTRK24PCGF24RARA4RBMS14SIRPA4TMEM974TRIM24ABAT3ARL4C3BCL11A3BIRC53CELSR13COL14A13CSE1L3CYP2B63DPT3GATA33GPM6B3IKBKB3IL6ST3JUN3LAMA23LAPTM4B3LPIN13MCM43PLAGL13PLK43PPAP2B3RARRES13RGS53RUNX1T13SFRP13SKP1A3SMC43SNRPA13SOX113
factor4732717q121119p13.31116p13.31020p1395q3196q25.19+2,419 more
17q121119p13.31116p13.31020p1395q3196q25.19+2,419 more
Levels
2,425
Used
473
Unused
1,952
Rows per level, the 50 commonest of 2,425
17q121119p13.31116p13.31020p1395q3196q25.192q24.288q22.1817q21712p13612q13615q26.362p25.166p12-p1166p21.366q22-q2369p24.1615q15.1515q22517q11.2517q21.1519q13.251p13.351p3451p34.1520q13.33522q13.2-q13.3522q13.3153p21.354q31.357p12510q25-qter411p15.5411q13411q13.1412q12-q13412q21.33412q22-q23415q26.1416p13.11418q21.33|18q21.3419q13.4341q2141q23.1420q13420q13.13420q13.3422q13.142p2542q37.14
factor62469BP240|BPA|BPAG1|CATX-15|D6S1101|DMH|FLJ46791|KIAA0465|KIAA1470|MACF26DKFZp686N23123|ER|ESR|ESRA|Era|NR3A16NFI-RED|NFIB2|NFIB36B995CAXII|FLJ20151|HsT188165ERBB|ERBB1|mENA5+10,947 more
BP240|BPA|BPAG1|CATX-15|D6S1101|DMH|FLJ46791|KIAA0465|KIAA1470|MACF26DKFZp686N23123|ER|ESR|ESRA|Era|NR3A16NFI-RED|NFIB2|NFIB36B995CAXII|FLJ20151|HsT188165ERBB|ERBB1|mENA5+10,947 more
Levels
10,953
Used
624
Unused
10,329
Rows per level, the 50 commonest of 10,953
BP240|BPA|BPAG1|CATX-15|D6S1101|DMH|FLJ46791|KIAA0465|KIAA1470|MACF26DKFZp686N23123|ER|ESR|ESRA|Era|NR3A16NFI-RED|NFIB2|NFIB36B995CAXII|FLJ20151|HsT188165ERBB|ERBB1|mENA5FBLN5AAT4|DKFZp686D10126|DKFZp686D19237|FAA4|FLJ35232|MGC126726|MGC32963|SMHC|SMMHC4BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS-1|SHPS1|SIRP|SIRP-ALPHA-1|SIRPalpha|SIRPalpha24Bcl-24CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B4DDPAC|FLJ31424|FTDP-17|MAPTL|MGC138549|MSTD|MTBT1|MTBT2|PPND|TAU4FLJ44906|KIAA08764GP145-TrkB|TRKB4IGFI4KIAA0517|RNF864KIA|Ki-674MAC304MEL-18|MGC10545|RNF110|ZNF1444MGC15146|MGC3331|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC14NR1B1|RAR4AML1T1|CBFA2T1|CDR|ETO|MGC2796|MTG8|MTG8b|ZMYND23AP1|c-Jun3API4|EPR-13ARL7|LAK3BCL11A-L|BCL11A-S|BCL11A-XL|CTIP1|EVI9|FLJ10173|FLJ34997|KIAA18093BP-8|CSDA2|CSDB|DBPB|MDR-NF1|MGC104858|MGC110976|MGC117250|NSEP-1|NSEP1|YB-1|YB13CAPC|SMC4L1|hCAP-C3CAS|CSE1|MGC117283|MGC130036|MGC130037|XPO23CD130|CDw130|GP130|GP130-RAPS|IL6R-beta3CDC21|CDC54|MGC33310|P1-CDC21|hCdc213CDHF9|DKFZp434P0729|FMI2|HFMI2|ME23CPB6|CYP2B|CYPIIB6|IIB1|P4503DKFZp781D0112|FLJ21627|KIAA1025|MED13L|PROSIT240|TRAP240L3DKFZp781P1017|LOT1|MGC126275|MGC126276|ZAC|ZAC13DKFZp781P1796|KIAA01883Dri42|LPP3|MGC15306|PAP-2b|PAP2-b|PAP2-beta|VCIP3EMC19|MGC34403|OCP-II|OCP2|SKP1|TCEB1L3FLJ10928|FLJ20515|SSH-33FLJ40509|IKK-beta|IKK2|IKKB|MGC131801|NFKBIKB3FRP|FRP-1|FRP1|FrzA|SARP23GABA-AT|GABAT|NPD0093HDR|MGC2346|MGC5199|MGC54453KIAA05753LAMM3LAPTM4beta|LC273M6B|MGC17150|MGC542843MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP1293PDEF|RP11-375E1__A.3|bA375E1.33SAK|STK183
factor65726dystonin6estrogen receptor 16nuclear factor I/B6G-2 and S-phase expressed 15carbonic anhydrase XII5epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)5+11,830 more
dystonin6estrogen receptor 16nuclear factor I/B6G-2 and S-phase expressed 15carbonic anhydrase XII5epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)5+11,830 more
Levels
11,836
Used
657
Unused
11,179
Rows per level, the 50 commonest of 11,836
dystonin6estrogen receptor 16nuclear factor I/B6G-2 and S-phase expressed 15carbonic anhydrase XII5epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)5fibulin 15B-cell CLL/lymphoma 24RNA binding motif, single stranded interacting protein 14antigen identified by monoclonal antibody Ki-674decorin4insulin-like growth factor 1 (somatomedin C)4jumonji domain containing 2B4microtubule-associated protein tau4myosin, heavy chain 11, smooth muscle4neurotrophic tyrosine kinase, receptor, type 24polycomb group ring finger 24retinoic acid receptor, alpha4signal-regulatory protein alpha4transmembrane protein 974tripartite motif-containing 244-aminobutyrate aminotransferase3ADP-ribosylation factor-like 4C3B-cell CLL/lymphoma 11A (zinc finger protein)3CSE1 chromosome segregation 1-like (yeast)3GATA binding protein 33GREB1 protein3MCM4 minichromosome maintenance deficient 4 (S. cerevisiae)3S-phase kinase-associated protein 1A (p19A)3SAM pointed domain containing ets transcription factor3SRY (sex determining region Y)-box 113Y box binding protein 13baculoviral IAP repeat-containing 5 (survivin)3cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)3collagen, type XIV, alpha 1 (undulin)3cytochrome P450, family 2, subfamily B, polypeptide 63dermatopontin3glycoprotein M6B3inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta3interleukin 6 signal transducer (gp130, oncostatin M receptor)3jun oncogene3laminin, alpha 2 (merosin, congenital muscular dystrophy)3lipin 13lysosomal associated protein transmembrane 4 beta3phosphatidic acid phosphatase type 2B3pleiomorphic adenoma gene-like 13polo-like kinase 4 (Drosophila)3regulator of G-protein signalling 53retinoic acid receptor responder (tazarotene induced) 13runt-related transcription factor 1; translocated to, 1 (cyclin D-related)3
Same structure in 1 other dataset
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.22 | 2025-10-29 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.21 | 2025-04-15 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.20 | 2024-10-29 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.19 | 2024-04-30 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.18 | 2023-10-24 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.17 | 2023-04-25 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.16 | 2022-11-01 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.15 | 2022-04-26 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.14 | 2021-10-26 | 966 × 7 | Unchanged | rda · xz version 3 · 2.6 MB | exact |
| 3.13 | 2021-05-21 | 966 × 7 | Repackaged | rda · xz version 3 · 2.6 MB | exact |
| 3.12 | 2021-01-25 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.11 | 2020-04-27 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.10 | 2020-01-31 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.9 | 2019-05-02 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.8 | 2018-10-30 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.7 | 2018-04-30 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.6 | 2018-04-10 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.5 | 2017-04-24 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.4 | 2016-10-17 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.3 | 2016-05-15 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.2 | 2015-10-13 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.1 | 2015-04-16 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.0 | 2014-10-13 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 2.14 | 2014-04-11 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 2.13 | 2013-10-14 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 2.12 | 2013-04-03 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 2.11 | 2012-10-01 | 966 × 7 | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 2.10 | 2012-09-12 | 966 × 7 | Repackaged | rda · xz version 2 · 2.5 MB | exact |
| 2.9 | 2011-10-31 | 966 × 7 | – | rda · gzip version 2 · 2.8 MB | exact |