ssp2003.robust
SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
Bundled with genefu · exported, loads via data()
Class
list
Elements
6
Missing
0
Format
rda · gzip
version 2 · 19 KB
File
data/ssp2003.robust.rda
Fingerprint
a8233f32
Format documented
Yes
Source
http://www.pnas.org/content/100/14/8418
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
6
Nesting depth
2
Element length
1 – 2,500
Total length
2,507
Nested rows
500
Nested columns
3
Elements
Element
Type
Distinct
Missing
Summary
centroidsnumeric2,3950-5.04 – 3.46·500 × 5 matrixmean -0.006
Min.
-5.04
1st Qu.
-0.307
Median
-0.0165
Mean
-0.006
3rd Qu.
0.2889
Max.
3.46
Std. dev
0.5896
Skewness
0.0115
Kurtosis
5.654
Outliers
12158 low · 63 high
centroids.maplist20nested·500 rows nested
Element length
500 – 500
Total length
1,500
Nested rows
500
What is inside it
Element
Type
Distinct
Missing
Summary
probe
character
500
0
11 – 13 characters
probe.centroids
character
500
0
11 – 13 characters
EntrezGene.IDinteger434639 – 374666mean 2.115e+4
Min.
9
1st Qu.
3171
Median
6744
Mean
21153.1
3rd Qu.
11145
Max.
374666
Std. dev
38464.8
Skewness
4.192
Kurtosis
25.24
Outliers
1070 low · 107 high
Longest gap
3
Leading
1
method.cor
character
1
0
8 characters
method.centroids
character
1
0
4 characters
std
character
1
0
6 characters
mins
numeric
1
0
5
Every nested table has these 3 columns
- probe
- probe.centroids
- EntrezGene.ID
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 1.0.9 | 2010-08-25 | 6 elements | Unchanged | rda · gzip version 2 · 19 KB | exact |
| 1.0.8 | 2010-07-26 | 6 elements | – | rda · gzip version 2 · 19 KB | exact |