pam50.robust
PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
Bundled with genefu · exported, loads via data()
Class
list
Elements
6
Missing
0
Format
rda · gzip
version 2 · 2.7 KB
File
data/pam50.robust.rda
Fingerprint
e2494009
Format documented
Yes
Source
http://jco.ascopubs.org/cgi/content/short/JCO.2008.18.1370v1
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
6
Nesting depth
2
Element length
1 – 250
Total length
257
Nested rows
50
Nested columns
3
Elements
Element
Type
Distinct
Missing
Summary
centroidsnumeric2500-2.7465 – 2.9228·50 × 5 matrixmean 3.2e-11
Min.
-2.7465
1st Qu.
-0.4548
Median
0.0389
Mean
3.2e-11
3rd Qu.
0.4414
Max.
2.9228
Std. dev
0.7673
Skewness
0.1878
Kurtosis
2.043
Outliers
83 low · 5 high
centroids.maplist20nested·50 rows nested
Element length
50 – 50
Total length
150
Nested rows
50
What is inside it
Element
Type
Distinct
Missing
Summary
probe
character
50
0
3 – 7 characters
probe.centroids
character
50
0
3 – 7 characters
EntrezGene.IDinteger5009 – 120224mean 1.579e+4
Min.
9
1st Qu.
2072.75
Median
4462.5
Mean
15788.2
3rd Qu.
11049.8
Max.
120224
Std. dev
25432
Skewness
2.276
Kurtosis
4.953
Outliers
110 low · 11 high
method.cor
character
1
0
8 characters
method.centroids
character
1
0
4 characters
std
character
1
0
6 characters
mins
numeric
1
0
5
Every nested table has these 3 columns
- probe
- probe.centroids
- EntrezGene.ID
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 1.0.9 | 2010-08-25 | 6 elements | Unchanged | rda · gzip version 2 · 2.7 KB | exact |
| 1.0.8 | 2010-07-26 | 6 elements | – | rda · gzip version 2 · 2.7 KB | exact |