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data.vdxs

Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007

Bundled with genefu · exported, loads via data()

Class
matrix
Dimensions
150 × 966
Missing
0
Format
rda · xz
version 2 · 665 KB
File
data/vdxs.rda
Fingerprint
22e29c2b
Format documented
Yes
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2034 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5327
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
144,900
Missing
0
Min.
-0.736966
1st Qu.
7.65607
Median
9.00028
Mean
8.84683
3rd Qu.
10.2217
Max.
16.0232
Std. dev
2.11642
Distinct
38,487
Skewness
-0.4306
Kurtosis
0.4898
Outliers
3,796 3230 low · 566 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows8.57078.77458.84178.84688.92339.09050.10501
Columns2.69397.82628.97438.846810.03814.5461.8072

The column means vary far more than the row means, so what separates the values runs across the columns.

Dimensions and labels
MarginLabelsCount
RowsVDX_93, VDX_258, VDX_612, VDX_9, VDX_243, VDX_913, VDX_637, VDX_796, VDX_131, VDX_1978, VDX_853, VDX_71, …150
Columns200039_s_at, 200600_at, 200618_at, 200670_at, 200711_s_at, 200718_s_at, 200783_s_at, 200790_at, 200795_at, 200803_s_at, 200804_at, 200810_s_at, …966
Columns

This object is 966 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

The same data in 1 other package

This data is identical to the data these packages carry, down to the byte. Where they call it something else, the other name is shown.

Structure fingerprint

1 other dataset carries the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 966 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.222025-10-29150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.212025-04-15150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.202024-10-29150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.192024-04-30150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.182023-10-24150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.172023-04-25150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.162022-11-01150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.152022-04-26150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.142021-10-26150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.132021-05-21150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.122021-01-25150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.112020-04-27150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.102020-01-31150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.92019-05-02150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.82018-10-30150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.72018-04-30150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.62018-04-10150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.52017-04-24150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.42016-10-17150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.32016-05-15150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.22015-10-13150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.12015-04-16150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
3.02014-10-13150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
2.142014-04-11150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
2.132013-10-14150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
2.122013-04-03150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
2.112012-10-01150 × 966Unchangedrda · xz
version 2 · 665 KB
exact
2.102012-09-12150 × 966Repackagedrda · xz
version 2 · 665 KB
exact
2.92011-10-31150 × 966–rda · gzip
version 2 · 1.2 MB
exact

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