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data.nkis

Gene expression, annotations and clinical data from van de Vijver et al. 2002

Bundled with genefu · exported, loads via data()

Class
matrix
Dimensions
150 × 922
Missing
361
Format
rda · xz
version 2 · 485 KB
File
data/nkis.rda
Fingerprint
30d72a73
Format documented
Yes
Source
http://www.nature.com/nature/journal/v415/n6871/full/415530a.html
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
138,300
Missing
361
Min.
-2
1st Qu.
-0.18
Median
-0.038
Mean
-0.0614939
3rd Qu.
0.083
Max.
2
Std. dev
0.276933
Distinct
2,510
Skewness
-0.8362
Kurtosis
5.97
Zeros
309 0.22%
Outliers
8,614 5832 low · 2782 high
Longest missing run
6
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows-0.30424-0.07845-0.052693-0.061686-0.041426-0.0102090.033796
Columns-1.0061-0.081131-0.03232-0.061442-0.0011850.0607850.10251

The column means vary far more than the row means, so what separates the values runs across the columns.

Dimensions and labels
MarginLabelsCount
RowsNKI_123, NKI_327, NKI_291, NKI_370, NKI_178, NKI_176, NKI_102, NKI_110, NKI_124, NKI_305, NKI_28, NKI_308, …150
ColumnsNM_000125, AB020689, NM_002051, NM_001218, NM_004496, NM_005375, NM_003462, NM_020686, NM_005080, NM_020974, AF007153, NM_000662, …922
Columns

This object is 922 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

The same data in 1 other package

This data is identical to the data these packages carry, down to the byte. Where they call it something else, the other name is shown.

The structure fingerprint comes down to the width and the type on an object with no columns, and it found nothing beyond this list.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.222025-10-29150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.212025-04-15150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.202024-10-29150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.192024-04-30150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.182023-10-24150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.172023-04-25150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.162022-11-01150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.152022-04-26150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.142021-10-26150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.132021-05-21150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.122021-01-25150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.112020-04-27150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.102020-01-31150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.92019-05-02150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.82018-10-30150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.72018-04-30150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.62018-04-10150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.52017-04-24150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.42016-10-17150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.32016-05-15150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.22015-10-13150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.12015-04-16150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
3.02014-10-13150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
2.142014-04-11150 × 922Unchangedrda · xz
version 2 · 485 KB
exact
2.132013-10-14150 × 922Unchangedrda · xz
version 2 · 486 KB
exact
2.122013-04-03150 × 922Unchangedrda · xz
version 2 · 486 KB
exact
2.112012-10-01150 × 922Unchangedrda · xz
version 2 · 486 KB
exact
2.102012-09-12150 × 922Repackagedrda · xz
version 2 · 485 KB
exact
2.92011-10-31150 × 922–rda · gzip
version 2 · 721 KB
exact

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