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sig.gene76

Signature used to compute the Relapse Score (GENE76) as published in Wang et al. 2005

Bundled with genefu · exported, loads via data()

Class
data.frame
Dimensions
76 × 10
Missing
76
Format
rda · gzip
version 2 · 5.9 KB
File
data/sig.gene76.rda
Fingerprint
97e927ab
Format documented
Yes
Source
http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(05)17947-1/abstract
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
probe
factor
76
0
200726_at1200965_s_at1201068_s_at1201091_s_at1201288_at1201368_at1+70 more
Levels
76
Used
76
Rows per level, the 50 commonest of 76
200726_at1200965_s_at1201068_s_at1201091_s_at1201288_at1201368_at1201663_s_at1201664_at1202239_at1202240_at1202418_at1202687_s_at1203306_s_at1203391_at1204014_at1204015_s_at1204073_s_at1204218_at1204540_at1204631_at1204740_at1204768_s_at1204888_s_at1205034_at1205848_at1206295_at1207118_s_at1208180_s_at1208683_at1209500_x_at1209524_at1209835_x_at1209862_s_at1210028_s_at1210314_x_at1210593_at1211040_x_at1211382_s_at1211762_s_at1211779_x_at1212014_x_at1212567_s_at1214806_at1214915_at1214919_s_at1215510_at1215633_x_at1216010_x_at1216103_at1216693_x_at1
std.cox.coefficient
numeric
75
0
-3.865 – 3.63mean -0.941
Min.
-3.865
1st Qu.
-3.01
Median
-2.7585
Mean
-0.941
3rd Qu.
2.7803
Max.
3.63
Std. dev
2.8569
Skewness
0.6407
Kurtosis
-1.564
cox.p.value
numeric
63
0
1.0e-5 – 0.0054mean 0.0012
Min.
1.0e-5
1st Qu.
0.0004
Median
0.0008
Mean
0.0012
3rd Qu.
0.0015
Max.
0.0054
Std. dev
0.0014
Skewness
1.722
Kurtosis
2.114
Outliers
90 low · 9 high
er
integer
2
0
0 – 1mean 0.7895
Min.
0
1st Qu.
1
Median
1
Mean
0.7895
3rd Qu.
1
Max.
1
Std. dev
0.4104
Skewness
-1.392
Kurtosis
-0.0622
Zeros
16
Order
descending
EntrezGene.ID
integer
60
12
32 – 284942mean 2.386e+4
Min.
32
1st Qu.
2273.75
Median
9141
Mean
23864.2
3rd Qu.
34473.5
Max.
284942
Std. dev
40777.7
Skewness
4.234
Kurtosis
23.53
Outliers
10 low · 1 high
Longest gap
2
Trailing
1
NCBI.gene.symbol
factor
60
12
CD442DUSP42HDGFRP32SMC42ABLIM11ACACB1+54 more
Levels
60
Used
60
Rows per level, the 50 commonest of 60
CD442DUSP42HDGFRP32SMC42ABLIM11ACACB1AP2A21ARHGDIB1ATAD21BCL2L141C11orf511C11orf91C1orf661C31CAPN21CBX31CCNE21CEP571CLN81CNKSR11COL2A11EEF1A21ETV21FEN11FKBP21GABRQ1GAS21GFOD21GOLPH21GTSE11HIST1H4H1IL181KIAA09131KPNA21LST11MAP41MGC708631MLF1IP1MMP23B1MYH21NCAPG21NEFL1NEURL1OR12D21ORC3L1PARP41PHF111PLK11POLQ1PPP1CC1
HUGO.gene.symbol
factor
58
15
CD442DUSP42SMC42ABLIM11ACACB1AP2A21+52 more
Levels
58
Used
58
Rows per level, the 50 commonest of 58
CD442DUSP42SMC42ABLIM11ACACB1AP2A21ARHGDIB1ATAD21BCL2L141C11orf511C11orf91C1orf661C31CAPN21CBX31CCNE21CEP571CLN81CNKSR11COL2A11EEF1A21ETV21FEN11FKBP21GABRQ1GAS21GFOD21GOLPH21GTSE11HIST1H4H1IL181KIAA09131KPNA21LST11MAP41MLF1IP1MMP23B1MYH21NCAPG21NEFL1NEURL1OR12D21ORC3L1PARP41PHF111PLK11POLQ1PPP1CC1PSMC21RFXDC21
Cytoband
factor
59
12
11p13215q11.223q26.126p21.328p12-p11210q22.21+53 more
Levels
59
Used
59
Rows per level, the 50 commonest of 59
11p13215q11.223q26.126p21.328p12-p11210q22.2110q25110q25.1110q26111p14.3-p15.2111p15.5111q12111q12-q13.1111q13111q13.1-q13.3111q13.4111q21111q22.2-q22.3112p12.3112p13-p12112q13.11-q13.2112q24.1-q24.2112q24.11112q24.31113q11113q14.3114q11.2115q21.3116p12.1116p13.3116q22.1117p13.1117q23.1-q23.3119p13.3-p13.2119q13.1211p36.1111p36.311q23.111q41-q42120q13.3120q13.33122q13.2-q13.3122q13.3313p2113q13.3313q2614q35.116p22.2-p21.3116q14.3-q16.116q151
Alternative.symbols
factor
59
13
CAPC|SMC4L1|hCAP-C2CDW44|ECMR-III|HCELL|IN|LHR|MC56|MDU2|MDU3|MGC10468|MIC4|MUTCH-I|Pgp12CGI-142|HDGF22HVH2|MKP-2|MKP2|TYP254TM|FinGER7|YIF1|YIF1P1ABLIM|DKFZp781D0148|FLJ14564|KIAA0059|LIMAB1|LIMATIN|MGC12241+53 more
Levels
59
Used
59
Rows per level, the 50 commonest of 59
CAPC|SMC4L1|hCAP-C2CDW44|ECMR-III|HCELL|IN|LHR|MC56|MDU2|MDU3|MGC10468|MIC4|MUTCH-I|Pgp12CGI-142|HDGF22HVH2|MKP-2|MKP2|TYP254TM|FinGER7|YIF1|YIF1P1ABLIM|DKFZp781D0148|FLJ14564|KIAA0059|LIMAB1|LIMATIN|MGC12241ACC2|ACCB|HACC2751ADPRTL1|PARPL|PH5P|VAULT3|VPARP|p1931ADTAB|CLAPA2|HIP9|HYPJ1AOM|COL11A3|MGC131516|SEDC1APO2L|Apo-2L|CD253|TL2|TRAIL1APY|BCAP|IGEL|IGER|IGHER|NY-REN-34|NYREN34|RP11-185C18.31ASP|CPAMD11AZU-1|ECTACC1B144|D6S49E|LST-1|MGC119006|MGC1190071B991BCLG1CANPL2|CANPml|FLJ39928|mCANP1CAP-G2|FLJ20311|LUZP5|MTB|hCAP-G21CDC68|FACT|FACTP140|FLJ10857|FLJ14010|FLJ34357|SPT16/CDC681CENP-50|CENP-U|CENP-U(50)|CENPU|FLJ23468|KLIP11CGI-411CMPST|CST|hCST|inactive1CMT1F|CMT2E|NF-L|NF68|NFL1CNK|CNK1|KSR1CYCE21D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN11DKFZP564M082|HSPC0201DKFZp434E22201DKFZp667N1320|MGC131938|MGC142216|MGC29843|MGC5254|PRO20001DKFZp779A1753|MGC86171DKFZp781A0112|POLH|PRO03271EEF1AL|EF-1-alpha-2|EF1A|HS1|STN1EPMR1ER71|ETSRP71|MGC129834|MGC1298351FEN-1|MF1|RAD21FKBP-13|PPIase1FLJ12994|FLJ21104|MGC1318361FLJ23802|MGC113351FLJ343021GP73|PSEC02571H4/h|H4FH1HECH|HP1-GAMMA|HP1Hs-gamma1IGIF|IL-18|IL-1g|IL1F4|MGC123201IPOA1|QIP2|RCH1|SRP1alpha1KIAA0092|PIG8|TSP571KIAA0954|MGC107811LAT|LATHEO|ORC31M83|TMEM61MGC126791|MGC126795|dJ994E9.8|hs6M1-201
Description
factor
60
12
CD44 molecule (Indian blood group)2dual specificity phosphatase 42hepatoma-derived growth factor, related protein 32structural maintenance of chromosomes 42ATPase family, AAA domain containing 21BCL2-like 14 (apoptosis facilitator)1+54 more
Levels
60
Used
60
Rows per level, the 50 commonest of 60
CD44 molecule (Indian blood group)2dual specificity phosphatase 42hepatoma-derived growth factor, related protein 32structural maintenance of chromosomes 42ATPase family, AAA domain containing 21BCL2-like 14 (apoptosis facilitator)1FK506 binding protein 2, 13kDa1G-2 and S-phase expressed 11KIAA09131MLF1 interacting protein1PHD finger protein 111Rho GDP dissociation inhibitor (GDI) beta1Yip1 interacting factor homolog A (S. cerevisiae)1acetyl-Coenzyme A carboxylase beta1actin binding LIM protein 11adaptor-related protein complex 2, alpha 2 subunit1calpain 2, (m/II) large subunit1centrosomal protein 57kDa1ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)1chromobox homolog 3 (HP1 gamma homolog, Drosophila)1chromosome 1 open reading frame 661chromosome 11 open reading frame 511chromosome 11 open reading frame 91collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)1complement component 31connector enhancer of kinase suppressor of Ras 11cyclin E21ets variant gene 21eukaryotic translation elongation factor 1 alpha 21flap structure-specific endonuclease 11gamma-aminobutyric acid (GABA) receptor, theta1glucose-fructose oxidoreductase domain containing 21golgi phosphoprotein 21growth arrest-specific 21histone cluster 1, H4h1interleukin 18 (interferon-gamma-inducing factor)1karyopherin alpha 2 (RAG cohort 1, importin alpha 1)1leukocyte specific transcript 11matrix metallopeptidase 23B1microtubule-associated protein 41myosin, heavy chain 2, skeletal muscle, adult1neuralized homolog (Drosophila)1neurofilament, light polypeptide 68kDa1non-SMC condensin II complex, subunit G21olfactory receptor, family 12, subfamily D, member 21origin recognition complex, subunit 3-like (yeast)1polo-like kinase 1 (Drosophila)1poly (ADP-ribose) polymerase family, member 41polymerase (DNA directed), theta1proteasome (prosome, macropain) 26S subunit, ATPase, 21
The same data in 1 other package

This data is identical to the data these packages carry, down to the byte.

genefuBioconductor

The structure fingerprint found nothing beyond this list.

Version history
VersionReleasedSizeChangeStored asConfidence
1.0.92010-08-2576 × 10Unchangedrda · gzip
version 2 · 5.9 KB
exact
1.0.82010-07-2676 × 10Unchangedrda · gzip
version 2 · 5.9 KB
exact
1.0.52010-04-1576 × 10Unchangedrda · gzip
version 2 · 5.9 KB
exact
1.0.42010-03-2676 × 10Unchangedrda · gzip
version 2 · 5.9 KB
exact
1.0.12010-01-2676 × 10Unchangedrda · gzip
version 2 · 5.9 KB
exact
1.0.02010-01-0176 × 10–rda · gzip
version 2 · 5.9 KB
exact

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