annot.nkis
Gene expression, annotations and clinical data from van de Vijver et al. 2002
Bundled with genefu · exported, loads via data()
Class
data.frame
Dimensions
922 × 7
Missing
384
Format
rda · xz
version 2 · 485 KB
File
data/nkis.rda
Fingerprint
b534d37c
Format documented
Yes
Source
http://www.nature.com/nature/journal/v415/n6871/full/415530a.html
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
factor9220AA555029_RC1AB0023511AB0023641AB0078991AB0079331AB0110891+24,475 more
AA555029_RC1AB0023511AB0023641AB0078991AB0079331AB0110891+24,475 more
Levels
24,481
Used
922
Unused
23,559
Rows per level, the 50 commonest of 24,481
AA555029_RC1AB0023511AB0023641AB0078991AB0079331AB0110891AB0145111AB0145341AB0145431AB0145931AB0206891AB0207021AB0231521AB0247041AB0289981AB0290251AB0329511AB0329731AB0330071AB0330431AB0377451AB0378481AB0378631AB0409001AB0409641AF0071531AF0155921AF0273021AF0381881AF0410371AF0521421AF0521591AF0521621AF0550121AF0550331AF0706171AF0735191AF1118491AF1122191AF1148181AF1485051AF1541211AF1551171AF1615531AF1760121AF2019511AF2571751AF2798651AJ2247411AK0001421
integer862509 – 404093mean 2.987e+4
Min.
9
1st Qu.
4467.25
Median
9545
Mean
29865.1
3rd Qu.
54484
Max.
404093
Std. dev
45839.1
Skewness
3.985
Kurtosis
23.57
Outliers
240 low · 24 high
Longest gap
4
factor86250DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12+13,113 more
DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12+13,113 more
Levels
13,119
Used
862
Unused
12,257
Rows per level, the 50 commonest of 13,119
DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12PECI2PITRM12ABAT1ABCA121ABCA31ABCA61ABCC81ABCD31ABCF11ABHD14A1ABHD91ABLIM31ABTB21ACADS1ACOX21ACOX31ACTR3B1ADAMTS11ADAMTS31ADIPOR21ADM1ADORA2B1ADRM11AFTPH1AGR21AGTR11AHSA11AIM11AK51AKR7A31ALCAM1ALDH4A11ALDH6A11AMIGO21ANG1ANXA91AP2B11APBB21APBB31APH1B1APLP11AQP11AREG1ARHGAP11A1
factor84072DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12+12,560 more
DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12+12,560 more
Levels
12,566
Used
840
Unused
11,726
Rows per level, the 50 commonest of 12,566
DIAPH33IGFBP53AURKA2ECT22KIF21A2NUSAP12PECI2PITRM12ABAT1ABCA121ABCA31ABCA61ABCC81ABCD31ABCF11ABHD14A1ABHD91ABLIM31ABTB21ACADS1ACOX21ACOX31ACTR3B1ADAMTS11ADAMTS31ADIPOR21ADM1ADORA2B1ADRM11AFTPH1AGR21AGTR11AHSA11AIM11AK51AKR7A31ALCAM1ALDH4A11ALDH6A11AMIGO21ANG1ANXA91AP2B11APBB21APBB31APH1B1APLP11AQP11AREG1ARHGAP11A1
factor5845016p13.31617q21.3361q21621q22.368q24.3612q135+2,478 more
16p13.31617q21.3361q21621q22.368q24.3612q135+2,478 more
Levels
2,484
Used
584
Unused
1,900
Rows per level, the 50 commonest of 2,484
16p13.31617q21.3361q21621q22.368q24.3612q13514q24.351q3251q32.153q2458q22.1511q13.1412p13413q12415q26.1417q12417q21417q25.3419p13.3419q13.241p13.3420q13.3343p21.145q3146p21.348p21.14Xq13.1410p13312p13.1312q12313q21.2313q34316q24.1316q24.3317q11.2317q12-q21317q21.2317q21.32317q22317q25.1319q13.1319q13.3-q13.4319q13.431p34.131p36.1-p3531q42.1131q42.13320p13320pter-q11.23320q13.2-q13.33
factor800112DKFZP434C0931|DKFZp686A13178|DRF3|FLJ34705|diap33IBP53ACBD2|DRS1|HCA88|dJ1013A10.32AIK|ARK1|AURA|AURORA2|BTAK|MGC34538|STK15|STK6|STK72ANKT|BM037|FLJ13421|LNP|PRO0310p1|Q0310|SAPL2CFEOM|CFEOM1|DKFZp779C159|FEOM|FEOM1|FLJ20052|KIAA17082+12,061 more
DKFZP434C0931|DKFZp686A13178|DRF3|FLJ34705|diap33IBP53ACBD2|DRS1|HCA88|dJ1013A10.32AIK|ARK1|AURA|AURORA2|BTAK|MGC34538|STK15|STK6|STK72ANKT|BM037|FLJ13421|LNP|PRO0310p1|Q0310|SAPL2CFEOM|CFEOM1|DKFZp779C159|FEOM|FEOM1|FLJ20052|KIAA17082+12,061 more
Levels
12,067
Used
800
Unused
11,267
Rows per level, the 50 commonest of 12,067
DKFZP434C0931|DKFZp686A13178|DRF3|FLJ34705|diap33IBP53ACBD2|DRS1|HCA88|dJ1013A10.32AIK|ARK1|AURA|AURORA2|BTAK|MGC34538|STK15|STK6|STK72ANKT|BM037|FLJ13421|LNP|PRO0310p1|Q0310|SAPL2CFEOM|CFEOM1|DKFZp779C159|FEOM|FEOM1|FLJ20052|KIAA17082FLJ10461|MGC1382912KIAA1104|MGC138192|MGC141929|MP1|hMP121110019O13Rik|DKFZp586A011|HCCR-2|HCCR11133K02|FAM114A2113CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1116E1BP117b-HSD10|ABAD|ERAB|HADH2|HCD2|MHBD|SCHAD12310061C15Rik|DC1312A9|5B10|CABP|CACY|PRA12P1|DKFZP564J0123|E3-3|MGC1052712|C6orf75|MDS024|TRM11|dJ187J11|dJ187J11.213-10C|AMCF-I|CXCL8|GCP-1|GCP1|K60|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1|SCYB8|TSG-1|b-ENAP13-PGDH|3PGDH|MGC3017|PDG|PGAD|PGD|PGDH|SERA13D3|AEG-1|AEG1|LYRIC14SPAN2|CD20L4|CFFM4|MGC22368|MS4A8153BP2|ASPP2|BBP|PPP1R13A|p53BP215DI|MGC130050|MGC130051|TXDI1160B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P1417B4|CD1441A-2|GRCA1A-C1|H-REV107|HRASLS1|HSD281A1|MGC27291|RFC371AAC1|NATI1AACT|ACT|GIG24|GIG25|MGC882541AADC1AAG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg1ABC-C|ABC3|EST111653|LBM180|MGC722011ABC27|ABC501ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|TNDM21ABC43|PMP70|PXMP11ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin1AC133|CD133|MSTP061|PROML11ACAD3|SCAD1ACDCR2|FLJ21432|MGC4640|PAQR21ACDP4|KIAA15921ACLS|GCPS|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV1ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL11AC|ASAH|FLJ21558|FLJ22079|PHP|PHP321AD024|MGC22228|Spc251ADAMTS-4|KIAA03661ADAPT78|CSP1|DSC1|MCIP1|RCN11ADORA21ADTB2|AP105B|AP2-BETA|CLAPB1|DKFZp781K07431ADXR1
factor86250diaphanous homolog 3 (Drosophila)3insulin-like growth factor binding protein 53aurora kinase A2epithelial cell transforming sequence 2 oncogene2kinesin family member 21A2nucleolar and spindle associated protein 12+13,113 more
diaphanous homolog 3 (Drosophila)3insulin-like growth factor binding protein 53aurora kinase A2epithelial cell transforming sequence 2 oncogene2kinesin family member 21A2nucleolar and spindle associated protein 12+13,113 more
Levels
13,119
Used
862
Unused
12,257
Rows per level, the 50 commonest of 13,119
diaphanous homolog 3 (Drosophila)3insulin-like growth factor binding protein 53aurora kinase A2epithelial cell transforming sequence 2 oncogene2kinesin family member 21A2nucleolar and spindle associated protein 12peroxisomal D3,D2-enoyl-CoA isomerase2pitrilysin metallopeptidase 1224-dehydrocholesterol reductase13-oxoacid CoA transferase 114-aminobutyrate aminotransferase1ADAM metallopeptidase with thrombospondin type 1 motif, 11ADAM metallopeptidase with thrombospondin type 1 motif, 31ADP-ribosyltransferase 31AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)1ARP3 actin-related protein 3 homolog B (yeast)1ATP-binding cassette, sub-family A (ABC1), member 121ATP-binding cassette, sub-family A (ABC1), member 31ATP-binding cassette, sub-family A (ABC1), member 61ATP-binding cassette, sub-family C (CFTR/MRP), member 81ATP-binding cassette, sub-family D (ALD), member 31ATP-binding cassette, sub-family F (GCN20), member 11ATPase family, AAA domain containing 21ATPase family, AAA domain containing 41ATPase, Ca++ transporting, type 2C, member 21ATPase, Class II, type 9A1B-cell CLL/lymphoma 11A (zinc finger protein)1B-cell CLL/lymphoma 21BCL2 binding component 31BCL2-associated athanogene1BCL2/adenovirus E1B 19kDa interacting protein 31BCL6 co-repressor1BTG family, member 21BTG family, member 31BUB1 budding uninhibited by benzimidazoles 1 homolog (yeast)1Bardet-Biedl syndrome 11Bloom syndrome1CAP-GLY domain containing linker protein family, member 41CCAAT/enhancer binding protein (C/EBP), gamma1CD163 molecule-like 11CD2 (cytoplasmic tail) binding protein 21CD24 molecule1CD68 molecule1CD8b molecule1CDC28 protein kinase regulatory subunit 1B1CDC28 protein kinase regulatory subunit 21CDC42 binding protein kinase alpha (DMPK-like)1CDK5 regulatory subunit associated protein 31CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 11CTP synthase1
Same structure in 2 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.22 | 2025-10-29 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.21 | 2025-04-15 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.20 | 2024-10-29 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.19 | 2024-04-30 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.18 | 2023-10-24 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.17 | 2023-04-25 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.16 | 2022-11-01 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.15 | 2022-04-26 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.14 | 2021-10-26 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.13 | 2021-05-21 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.12 | 2021-01-25 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.11 | 2020-04-27 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.10 | 2020-01-31 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.9 | 2019-05-02 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.8 | 2018-10-30 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.7 | 2018-04-30 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.6 | 2018-04-10 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.5 | 2017-04-24 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.4 | 2016-10-17 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.3 | 2016-05-15 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.2 | 2015-10-13 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.1 | 2015-04-16 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 3.0 | 2014-10-13 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 2.14 | 2014-04-11 | 922 × 7 | Unchanged | rda · xz version 2 · 485 KB | exact |
| 2.13 | 2013-10-14 | 922 × 7 | Unchanged | rda · xz version 2 · 486 KB | exact |
| 2.12 | 2013-04-03 | 922 × 7 | Unchanged | rda · xz version 2 · 486 KB | exact |
| 2.11 | 2012-10-01 | 922 × 7 | Unchanged | rda · xz version 2 · 486 KB | exact |
| 2.10 | 2012-09-12 | 922 × 7 | Repackaged | rda · xz version 2 · 485 KB | exact |
| 2.9 | 2011-10-31 | 922 × 7 | – | rda · gzip version 2 · 721 KB | exact |