vmrseq
Bioc currentProbabilistic Modeling of Single-cell Methylation Heterogeneity
Release Lineage
Entered 3.21 · Apr 16, 2025
Current · Requires R 4.6
Description
High-throughput single-cell measurements of DNA methylation allows studying inter-cellular epigenetic heterogeneity, but this task faces the challenges of sparsity and noise. We present vmrseq, a statistical method that overcomes these challenges and identifies variably methylated regions accurately and robustly.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
40 8 exported
Complexity
4 avg / 14 max
Call network
40 nodes / 37 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,897
Files
62
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
8
Internal functions
32
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2025-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 92%
- Documented parameters
- 96%
- Return-value docs
- 100%
- References docs
- 23%
Topics
People
- Ning Shen author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("vmrseq")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.