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geneplotter

Bioc current

Graphics related functions for Bioconductor

v1.90.0 · software · Artistic-2.0

Release Lineage

Entered 1.0 · Jan 5, 2001

Current · Requires R 4.6

1.0 In 49 of 49 releases 3.23

Description

Functions for plotting genomic data

Test coverage

Line coverage

Expression

Tests / Examples

Functions

51 20 exported

Complexity

3.7 avg / 21 max

Call network

51 nodes / 36 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

2,824

Files

43

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,460 (51.7%)Docs 1,118 (39.6%)Vignettes 246 (8.7%)

API

Exported functions

20

Internal functions

31

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

66.7%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

46

First release

2002-05-02

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

14

LOC over versions

v1.0: 1,081 LOCv1.4: 1,839 LOCv1.5: 1,958 LOCv1.6: 2,227 LOCv1.7: 2,283 LOCv1.8: 2,447 LOCv1.9: 2,516 LOCv2.0: 2,685 LOCv2.1: 2,748 LOCv2.2: 2,676 LOCv2.3: 2,797 LOCv2.4: 2,460 LOCv2.5: 2,472 LOCv2.6: 2,487 LOCv2.7: 2,487 LOCv2.8: 2,487 LOCv2.9: 2,480 LOCv2.10: 2,480 LOCv2.11: 2,497 LOCv2.12: 2,497 LOCv2.13: 2,578 LOCv2.14: 2,841 LOCv3.0: 2,841 LOCv3.1: 2,841 LOCv3.2: 2,841 LOCv3.3: 2,841 LOCv3.4: 2,841 LOCv3.5: 2,841 LOCv3.6: 2,841 LOCv3.7: 2,841 LOCv3.8: 2,841 LOCv3.9: 2,841 LOCv3.10: 2,841 LOCv3.11: 2,841 LOCv3.12: 2,841 LOCv3.13: 2,841 LOCv3.14: 2,841 LOCv3.15: 2,841 LOCv3.16: 2,841 LOCv3.17: 2,841 LOCv3.18: 2,824 LOCv3.19: 2,824 LOCv3.20: 2,824 LOCv3.21: 2,824 LOCv3.22: 2,824 LOCv3.23: 2,824 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
92%
Return-value docs
54%
References docs
0%

Topics

Depended on by (21)

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("geneplotter")
Bioconductor Package Maintainer, Gentleman, R., & Satyam, R. (2026). geneplotter: Graphics related functions for Bioconductor (Version 1.90.0) [Computer software]. https://bioconductor.org/packages/geneplotter

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for geneplotter version 1.90.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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