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hgByChroms

A dataset to show the human genome base pair locations per chromosome.

Bundled with annotate · exported, loads via data()

Class
list
Elements
24
Missing
0
Format
rda · xz
version 2 · 51 KB
File
data/hgByChroms.rda
Fingerprint
43ad51d6
Format documented
Yes
Source
Cheng Li of the Dana-Farber Cancer Institute.
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
24
Element length
21 – 951
Total length
9,248
Elements
Element
Type
Distinct
Missing
Summary
1
numeric
743
0
-285538653 – 285723131mean 3.305e+6
Min.
-285538653
1st Qu.
-1.32827e+8
Median
-522864
Mean
3.30462e+6
3rd Qu.
138123389
Max.
285723131
Std. dev
1.60325e+8
Skewness
0.0107
Kurtosis
-1.138
2
numeric
443
0
-253119605 – 252813666mean 9.541e+6
Min.
-253119605
1st Qu.
-131595062
Median
28350881
Mean
9.54092e+6
3rd Qu.
132224832
Max.
252813666
Std. dev
1.52916e+8
Skewness
-0.1361
Kurtosis
-1.22
3
numeric
377
0
-227470508 – 226477258mean -3.365e+5
Min.
-227470508
1st Qu.
-1.08679e+8
Median
13440918
Mean
-336539
3rd Qu.
92748181
Max.
226477258
Std. dev
1.28022e+8
Skewness
-0.0983
Kurtosis
-1.035
4
numeric
253
0
-209494140 – 209452436mean -1.902e+6
Min.
-209494140
1st Qu.
-9.27081e+7
Median
732254
Mean
-1.90202e+6
3rd Qu.
9.19379e+7
Max.
209452436
Std. dev
1.14841e+8
Skewness
-0.049
Kurtosis
-1.162
5
numeric
302
0
-200690605 – 200199415mean 5.948e+6
Min.
-200690605
1st Qu.
-129190257
Median
12408278
Mean
5.94767e+6
3rd Qu.
144793880
Max.
200199415
Std. dev
1.31405e+8
Skewness
-0.0263
Kurtosis
-1.527
6
numeric
400
0
-191761685 – 191738706mean 4.002e+6
Min.
-191761685
1st Qu.
-42552352
Median
4890265
Mean
4.00244e+6
3rd Qu.
49320566
Max.
191738706
Std. dev
9.27708e+7
Skewness
0.0397
Kurtosis
-0.3973
Outliers
2817 low · 11 high
7
numeric
319
0
-171876054 – 169825736mean 1.218e+7
Min.
-171876054
1st Qu.
-7.21782e+7
Median
1.59899e+7
Mean
1.21773e+7
3rd Qu.
1.06381e+8
Max.
169825736
Std. dev
9.80647e+7
Skewness
-0.1348
Kurtosis
-1.234
8
numeric
231
0
-163166943 – 163974410mean -1.032e+7
Min.
-163166943
1st Qu.
-80886102
Median
315959
Mean
-1.03195e+7
3rd Qu.
46253360
Max.
163974410
Std. dev
8.81794e+7
Skewness
-0.0065
Kurtosis
-0.9418
9
numeric
256
0
-152730187 – 151906424mean -7.606e+5
Min.
-152730187
1st Qu.
-1.04068e+8
Median
-7775071
Mean
-760597
3rd Qu.
1.09208e+8
Max.
151906424
Std. dev
1.04803e+8
Skewness
0.0408
Kurtosis
-1.452
10
numeric
255
0
-146539755 – 146704919mean 8.864e+6
Min.
-146539755
1st Qu.
-7.96883e+7
Median
1.41716e+7
Mean
8.86439e+6
3rd Qu.
102528968
Max.
146704919
Std. dev
9.35559e+7
Skewness
-0.1498
Kurtosis
-1.452
11
numeric
405
0
-153076286 – 147922610mean -4.733e+6
Min.
-153076286
1st Qu.
-7.53251e+7
Median
-1.63583e+6
Mean
-4.73338e+6
3rd Qu.
7.26146e+7
Max.
147922610
Std. dev
8.59608e+7
Skewness
-0.0039
Kurtosis
-1.245
12
numeric
394
0
-153379163 – 153247687mean 4.726e+6
Min.
-153379163
1st Qu.
-61392795
Median
4550120
Mean
4.72642e+6
3rd Qu.
63564012
Max.
153247687
Std. dev
8.07654e+7
Skewness
-0.0057
Kurtosis
-0.9513
13
numeric
123
0
-118416483 – 118655368mean 5.623e+6
Min.
-118416483
1st Qu.
-46762647
Median
19341398
Mean
5.62288e+6
3rd Qu.
55786134
Max.
118655368
Std. dev
7.13386e+7
Skewness
-0.0153
Kurtosis
-1.162
14
numeric
228
0
-105484724 – 105761814mean 1.769e+6
Min.
-105484724
1st Qu.
-6.2089e+7
Median
1.7339e+7
Mean
1.76874e+6
3rd Qu.
62180810
Max.
105761814
Std. dev
6.43899e+7
Skewness
-0.0072
Kurtosis
-1.376
15
numeric
191
0
-107344136 – 106907003mean 5.271e+6
Min.
-107344136
1st Qu.
-5.78451e+7
Median
2.82177e+7
Mean
5.27051e+6
3rd Qu.
67706147
Max.
106907003
Std. dev
6.66546e+7
Skewness
-0.085
Kurtosis
-1.599
16
numeric
264
0
-108530806 – 108451781mean 7.548e+6
Min.
-108530806
1st Qu.
-2.49638e+7
Median
4106412
Mean
7.54793e+6
3rd Qu.
6.61846e+7
Max.
108451781
Std. dev
6.08321e+7
Skewness
-0.177
Kurtosis
-0.9485
17
numeric
417
0
-89867500 – 89833552mean -8.768e+5
Min.
-89867500
1st Qu.
-4.3751e+7
Median
-1659298
Mean
-876785
3rd Qu.
4.45343e+7
Max.
89833552
Std. dev
5.01802e+7
Skewness
0.026
Kurtosis
-1.193
18
numeric
122
0
-89872660 – 90048220mean -5.18e+6
Min.
-89872660
1st Qu.
-50715031
Median
-36976
Mean
-5.18018e+6
3rd Qu.
3.41836e+7
Max.
90048220
Std. dev
4.83881e+7
Skewness
0.0164
Kurtosis
-1.062
19
numeric
454
0
-72259719 – 72242257mean 1.149e+6
Min.
-72259719
1st Qu.
-4.40389e+7
Median
1227173
Mean
1.14927e+6
3rd Qu.
4.39608e+7
Max.
72242257
Std. dev
4.39005e+7
Skewness
-0.0497
Kurtosis
-1.214
20
numeric
183
0
-64472722 – 64785447mean 5.317e+6
Min.
-64472722
1st Qu.
-3.55017e+7
Median
3.22596e+6
Mean
5.31702e+6
3rd Qu.
4.51743e+7
Max.
64785447
Std. dev
4.14143e+7
Skewness
-0.172
Kurtosis
-1.369
21
numeric
83
0
-44442765 – 44843149mean 2.074e+5
Min.
-44442765
1st Qu.
-3.52186e+7
Median
-13278946
Mean
207387
3rd Qu.
37780997
Max.
44843149
Std. dev
3.66958e+7
Skewness
0.0491
Kurtosis
-1.886
22
numeric
182
0
-47567475 – 47680666mean 7.138e+5
Min.
-47567475
1st Qu.
-3.31873e+7
Median
1.65295e+7
Mean
713814
3rd Qu.
3.30954e+7
Max.
47680666
Std. dev
3.22645e+7
Skewness
-0.0881
Kurtosis
-1.687
X
numeric
308
0
-158934385 – 159511266mean 1.747e+7
Min.
-158934385
1st Qu.
-50333706
Median
37936690
Mean
1.74714e+7
3rd Qu.
100165238
Max.
159511266
Std. dev
9.87153e+7
Skewness
-0.3111
Kurtosis
-1.034
Y
numeric
20
0
-25338067 – 27502955mean 1.146e+6
Min.
-25338067
1st Qu.
-15407826
Median
2729728
Mean
1.14623e+6
3rd Qu.
14326924
Max.
27502955
Std. dev
1.75865e+7
Skewness
-0.0941
Kurtosis
-1.516
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2824 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.222025-10-2924 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.212025-06-1824 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.202024-10-2924 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.192024-04-3024 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.182023-10-2424 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.172023-04-2524 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.162022-11-0124 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.152022-04-2624 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.142021-10-2624 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.132021-05-1924 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.122020-10-2724 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.112020-04-2724 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.102019-10-2924 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.92019-05-0224 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.82019-03-0724 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.72018-04-3024 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.62018-03-2024 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.52017-04-2424 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.42016-12-2124 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.32016-10-0724 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.22015-10-1324 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.12015-07-1024 elementsUnchangedrda · xz
version 2 · 51 KB
exact
3.02014-10-1324 elementsUnchangedrda · xz
version 2 · 51 KB
exact
2.142014-07-1624 elementsUnchangedrda · xz
version 2 · 51 KB
exact
2.132014-02-2624 elementsUnchangedrda · xz
version 2 · 51 KB
exact
2.122013-04-0324 elementsUnchangedrda · xz
version 2 · 51 KB
exact
2.112012-10-0124 elementsUnchangedrda · xz
version 2 · 51 KB
exact
2.102012-06-2824 elementsRepackagedrda · xz
version 2 · 51 KB
exact
2.92012-03-1424 elementsUnchangedrda · gzip
version 2 · 72 KB
exact
2.82011-08-2524 elementsUnchangedrda · gzip
version 2 · 72 KB
exact
2.72011-03-0324 elementsUnchangedrda · gzip
version 2 · 72 KB
exact
2.62010-07-0624 elementsUnchangedrda · gzip
version 2 · 72 KB
exact
2.52010-01-0924 elementsRepackagedrda · gzip
version 2 · 72 KB
exact
2.42009-04-2024 elementsUnchangedrda · none
version 2 · 219 KB
exact
2.32008-11-0824 elementsUnchangedrda · none
version 2 · 219 KB
exact
2.22008-04-3024 elementsUnchangedrda · none
version 2 · 219 KB
exact
2.12007-10-2724 elementsUnchangedrda · none
version 2 · 219 KB
exact
2.02007-04-2424 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.92006-11-2824 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.82006-04-2524 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.72005-10-1324 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.62005-06-1024 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.52005-03-1824 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.42004-08-2324 elementsUnchangedrda · none
version 2 · 219 KB
exact
1.02002-05-0224 elements–rda · none
version 2 · 219 KB
exact

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