OSCA.multisample

Description

Deploys the multi-sample analysis chapters for the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes the handling of multiple samples in a single-cell RNA-seq analysis, starting with integration of multiple datasets into a common space for consistent analyses, differential expression comparisons between conditions based on pseudo-bulk samples, and differential abundance analyses for cell subpopulations. It is intended for readers who are already familiar with basic single-cell analyses, possibly after reading some of the prior books in this collection.

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Topics

Depended on by (2)

People

• Alan O'Callaghan maintainer
• Robert Amezquita author
• Raphael Gottardo author
• Stephanie Hicks author
• Aaron Lun author