MouseGastrulationData
Bioc currentSingle-Cell -omics Data across Mouse Gastrulation and Early Organogenesis
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 8 exported
Complexity
2.9 avg / 14 max
Call network
15 nodes / 13 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,238
Files
58
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
7
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 91%
- Documented parameters
- 100%
- Return-value docs
- 73%
- References docs
- 100%
Topics
Depended on by (3)
Bioconductor (3)
People
- Jonathan Griffiths author maintainer
- Aaron Lun author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MouseGastrulationData")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.