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uwot

The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction

v0.2.4 · Nov 9, 2025 · GPL (>= 3)

Description

An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <doi:10.48550/arXiv.1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <doi:10.48550/arXiv.1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.

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CRAN Check Status

2 NOTE
12 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is 16.6Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 16.9Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 16.6Mb
  sub-directories of 1Mb or more:
    libs  15.6Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 16.9Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb

Reverse Dependencies (44)

Dependency Network

Dependencies Reverse dependencies Matrix FNN irlba Rcpp RcppAnnoy RSpectra BioM2 ClustAssess EmbedSOM ExpressionCellNet HDStIM MethScope Seurat WormTensor bbknnR embed fastTopics iCellR mxnorm pandemonium rliger +29 more reverse deps uwot

Version History

new 0.2.4 Mar 10, 2026
updated 0.2.4 ← 0.2.3 diff Nov 9, 2025
updated 0.2.3 ← 0.2.2 diff Feb 23, 2025
updated 0.2.2 ← 0.2.1 diff Apr 20, 2024
updated 0.2.1 ← 0.1.16 diff Apr 14, 2024
updated 0.1.16 ← 0.1.15 diff Jun 28, 2023
updated 0.1.15 ← 0.1.14 diff Jun 25, 2023
updated 0.1.14 ← 0.1.13 diff Aug 21, 2022
updated 0.1.13 ← 0.1.11 diff Aug 15, 2022
updated 0.1.11 ← 0.1.10 diff Dec 1, 2021
updated 0.1.10 ← 0.1.9 diff Dec 14, 2020
updated 0.1.9 ← 0.1.8 diff Nov 14, 2020
updated 0.1.8 ← 0.1.5 diff Mar 15, 2020
updated 0.1.5 ← 0.1.4 diff Dec 3, 2019
updated 0.1.4 ← 0.1.3 diff Sep 22, 2019
updated 0.1.3 ← 0.1.2 diff Apr 7, 2019
new 0.1.2 Apr 5, 2019