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Rtsne

T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

v0.17 · Dec 7, 2023 · file LICENSE
CRAN GitHub Mirror

Description

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

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CRAN Check Status

14 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (59)

depends

KODAMA

imports

CINNA ComBatFamQC EmbedSOM EvoPhylo FateID HDclust HVT MBMethPred Mercator PAC PsychWordVec RaceID SNPfiltR Seurat SuperCell WormTensor ZetaSuite bbknnR caretSDM clusterWebApp conos densityClust fastTopics ggpca ggsem iCellR immunaut labdsv maotai pagoda2 pandemonium polarisR randomcoloR scStability swaRmverse theftdlc visvow

suggests

Evacluster MiscMetabar NGCHM ProjectionBasedClustering UCSCXenaShiny coRanking diceR dimRed dyndimred fdm2id immunarch inferCSN mmb pctax rliger rtemis seriation sgdGMF stm tinyarray topolow

Dependency Network

Dependencies Reverse dependencies Rcpp KODAMA CINNA ComBatFamQC EmbedSOM EvoPhylo FateID HDclust HVT MBMethPred Mercator PAC PsychWordVec RaceID SNPfiltR Seurat +44 more reverse deps Rtsne

Version History

new 0.17 Mar 10, 2026
updated 0.17 ← 0.16 diff Dec 6, 2023
updated 0.16 ← 0.15 diff Apr 16, 2022
updated 0.15 ← 0.13 diff Nov 9, 2018
updated 0.13 ← 0.11 diff Apr 13, 2017
updated 0.11 ← 0.10 diff Jun 29, 2016
updated 0.10 ← 0.9 diff May 25, 2015
updated 0.9 ← 0.8 diff Sep 17, 2014
updated 0.8 ← 0.6 diff Jul 27, 2014
updated 0.6 ← 0.5 diff Jun 22, 2014
new 0.5 May 26, 2014