rebook
Bioc currentRe-using Content in Bioconductor Books
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
41 25 exported
Complexity
2.8 avg / 12 max
Call network
41 nodes / 34 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,589
Files
68
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
16
Testing & CI
Has tests
Yes
Test-to-code ratio
0.39
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
37.5%
Unsafe pattern score
3
Dep constraint coverage
12.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 90%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (9)
Bioconductor (9)
People
- Aaron Lun author maintainer cph