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OSCA.basic

Bioc removed

Single-Cell Analysis Basics

v1.20.0 · CC BY 4.0
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Release Lineage

Entered 3.13 · May 20, 2021

Removed after 3.23 · Apr 29, 2026

1.0 In 11 of 49 releases 3.23

Description

Deploys basic analysis chapters for the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes the steps of a simple single-cell RNA-seq analysis, involving quality control, normalization, various forms of dimensionality reduction, clustering into subpopulations, detection of marker genes, and annotation of cell types. It is intended for users who already have some familiarity with R and want to get hands-on with some basic single-cell analyses.

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Topics

Workflow › ImmunoOncologyWorkflow
Workflow
Workflow › SingleCellWorkflow

Depended on by (3)

Bioconductor (3)

OSCA OSCA.advanced OSCA.multisample

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