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OSCA.workflows

Bioc removed

OSCA Workflows

v1.20.0 · CC BY 4.0

Release Lineage

Entered 3.13 · May 20, 2021

Removed after 3.23 · Apr 29, 2026

1.0 In 11 of 49 releases 3.23

Description

Deploys the workflows of the "Orchestrating Single Cell Analysis with Bioconductor" book. This contains worked case studies of analyses of a variety of single-cell datasets, each proceeding from a SingleCellExperiment object. Exposition is generally minimal other than for dataset-specific justifications for parameter tweaks; refer to the other books in the OCSA collection for a detailed explanation of the theoretical basis of each step. It is intended for readers who already know the background and just want some code to copy and paste into their own analyses.

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Depended on by (5)

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Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OSCA.workflows")
Hickey, P., Amezquita, R., Gottardo, R., Hicks, S., & Lun, A. (2026). OSCA.workflows: OSCA Workflows (Version 1.20.0) [Computer software]. https://bioconductor.org/packages/OSCA.workflows

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OSCA.workflows version 1.20.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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