InteractionSet
Bioc currentBase Classes for Storing Genomic Interaction Data
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
86 1 exported
Complexity
3 avg / 10 max
Call network
86 nodes / 43 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,463
Files
63
Compiled share
9.1%
Has compiled src
Yes
Language breakdown
API
Exported functions
1
Internal functions
34
Testing
Has tests
Yes
Test-to-code ratio
1.22
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
11.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1 externalC++11
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-06-14
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 21
- Examples that run
- 100%20 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Depended on by (33)
Show 39 packagesHide 39 packages
Bioconductor (31)
Suggested by (7)
People
- Aaron Lun author maintainer
- Elizabeth Ing-Simmons author
- Malcolm Perry author
Cite
Cite this package
Run in R for the authors' entry:
citation("InteractionSet")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.