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nullranges

Bioc current

Generation of null ranges via bootstrapping or covariate matching

v1.18.0 · software · GPL-3
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Release Lineage

Entered 3.14 · Oct 27, 2021

Current · Requires R 4.6

1.0 In 10 of 49 releases 3.23

Description

Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or sets of control ranges that are matched across one or more covariates. nullranges is designed to be inter-operable with other packages for analysis of genomic overlap enrichment, including the plyranges Bioconductor package.

Code

Code metrics have not been computed for this package yet.

Topics

Software › WorkflowStep › Visualization
Software › BiologicalQuestion › GeneSetEnrichment
Software › ResearchField › FunctionalGenomics
Software › ResearchField › Epigenetics
Software › BiologicalQuestion › GeneRegulation
Software › BiologicalQuestion › GeneTarget
Software › BiologicalQuestion › GenomeAnnotation
Software › WorkflowStep › Annotation
Software › BiologicalQuestion › GenomeWideAssociation
Software › BiologicalQuestion › HistoneModification
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › ATACSeq
Software › Technology › Sequencing › DNaseSeq
Software › Technology › Sequencing › RNASeq
Software › StatisticalMethod › HiddenMarkovModel

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Bioconductor (1)

tidyomics

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