nullranges
Bioc currentGeneration of null ranges via bootstrapping or covariate matching
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
Description
Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or sets of control ranges that are matched across one or more covariates. nullranges is designed to be inter-operable with other packages for analysis of genomic overlap enrichment, including the plyranges Bioconductor package.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
44 5 exported
Complexity
3.2 avg / 10 max
Call network
44 nodes / 39 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,845
Files
62
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
26
Internal functions
39
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.14
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2021-11-05
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 27 (1 internal)
- Examples that run
- 96%24 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
- Exported functions with examples
- 96%
- Documented parameters
- 100%
- Return-value docs
- 81%
- Help pages citing references
- 11%
Repository practices
8 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/nullranges/nullranges on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-08-20 · The repository has a site deploy workflow
pkgdown site last built 2026-08-20
Topics
Suggested by (1)
People
- Michael Love author maintainer
- CZI funder
- Eric Davis author
- Mikhail Dozmorov contributor
- Stuart Lee author
- Wancen Mu author
- Douglas Phanstiel author
- Tim Triche contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("nullranges")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btad197, 10.1093/bioinformatics/btad190.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.