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HiCParser

Bioc current

Parser for HiC data in R

v1.4.0 · software · LGPL
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Release Lineage

Entered 3.21 · Apr 16, 2025

Current · Requires R 4.6

1.0 In 3 of 49 releases 3.23

Description

This package is a parser to import HiC data into R. It accepts several type of data: tabular files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files. The HiC data can be several files, for several replicates and conditions. The data is formated in an InteractionSet object.

Code

Code metrics have not been computed for this package yet.

Topics

Software
Software › Technology › Sequencing › HiC
Software › Infrastructure › DataImport

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CRAN (1)

treediff

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