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extraChIPs

Bioc current

Additional functions for working with ChIP-Seq data

v1.16.2 · software · GPL-3
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also implemented.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › HiC
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage

Depended on by (2)

Bioconductor (2)

motifTestR transmogR

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