GenomicInteractions
Bioc currentUtilities for handling genomic interaction data
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
Utilities for handling genomic interaction data such as ChIA-PET or Hi-C, annotating genomic features with interaction information, and producing plots and summary statistics.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
30 15 exported
Complexity
3 avg / 14 max
Call network
30 nodes / 16 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,654
Files
87
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
44
Internal functions
15
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.15
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
13.6%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-10-28
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
17
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 96%
- Return-value docs
- 100%
- References docs
- 4%
Topics
Depended on by (13)
Bioconductor (11)
People
Liz Ing-Simmons
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GenomicInteractions")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.