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Robust Ancestry Inference using Data Synthesis

v1.10.0 · software · Apache License (>= 2)
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Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

This package implements specialized algorithms that enable genetic ancestry inference from various cancer sequences sources (RNA, Exome and Whole-Genome sequences). This package also implements a simulation algorithm that generates synthetic cancer-derived data. This code and analysis pipeline was designed and developed for the following publication: Belleau, P et al. Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms. Cancer Res 1 January 2023; 83 (1): 49–58.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Genetics
Software
Software › Technology › Sequencing
Software › Technology › Sequencing › WholeGenome
Software › StatisticalMethod › PrincipalComponent
Software › AssayDomain › GeneticVariability
Software › StatisticalMethod › DimensionReduction
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