RAIDS
Bioc currentRobust Ancestry Inference using Data Synthesis
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
This package implements specialized algorithms that enable genetic ancestry inference from various cancer sequences sources (RNA, Exome and Whole-Genome sequences). This package also implements a simulation algorithm that generates synthetic cancer-derived data. This code and analysis pipeline was designed and developed for the following publication: Belleau, P et al. Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms. Cancer Res 1 January 2023; 83 (1): 49–58.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
117 40 exported
Complexity
5.3 avg / 22 max
Call network
117 nodes / 155 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
38,903
Files
364
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
40
Internal functions
77
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.44
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
Apache License (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 14%
Topics
People
- Pascal Belleau maintainer author
- Astrid Deschênes author
- Alexander Krasnitz author
- David A. Tuveson author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RAIDS")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.