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GenomicDistributions

Bioc current

GenomicDistributions: fast analysis of genomic intervals with Bioconductor

v1.20.0 · software · BSD_2_clause + file LICENSE
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Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

If you have a set of genomic ranges, this package can help you with visualization and comparison. It produces several kinds of plots, for example: Chromosome distribution plots, which visualize how your regions are distributed over chromosomes; feature distance distribution plots, which visualizes how your regions are distributed relative to a feature of interest, like Transcription Start Sites (TSSs); genomic partition plots, which visualize how your regions overlap given genomic features such as promoters, introns, exons, or intergenic regions. It also makes it easy to compare one set of ranges to another.

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Topics

Software
Software › BiologicalQuestion › GenomeAnnotation
Software › BiologicalQuestion › GenomeAssembly
Software › Infrastructure › DataRepresentation
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › ResearchField › FunctionalGenomics
Software › WorkflowStep › Visualization

People