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RITAN

Bioc current

Rapid Integration of Term Annotation and Network resources

v1.36.0 · software · file LICENSE

Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

26 16 exported

Complexity

7.5 avg / 42 max

Call network

26 nodes / 16 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

3,935

Files

48

Compiled share

0%

Has compiled src

No

Language breakdown

R 2,110 (53.6%)Docs 1,000 (25.4%)Vignettes 825 (21%)

API

Exported functions

16

Internal functions

10

Recent export changes

v3.7+1 resource_reduce
v3.6+3 as.graph, geneset_overlap, icon_test

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.0

System requirements

C++ standard

License

file LICENSE

License flags

SPDX valid, not OSI

History

Versions

19

First release

2017-04-24

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

13

LOC over versions

v3.5: 3,012 LOCv3.6: 3,587 LOCv3.7: 3,791 LOCv3.8: 3,799 LOCv3.9: 3,799 LOCv3.10: 3,799 LOCv3.11: 3,862 LOCv3.12: 3,862 LOCv3.13: 3,862 LOCv3.14: 3,862 LOCv3.15: 3,932 LOCv3.16: 3,932 LOCv3.17: 3,932 LOCv3.18: 3,932 LOCv3.19: 3,932 LOCv3.20: 3,932 LOCv3.21: 3,932 LOCv3.22: 3,935 LOCv3.23: 3,935 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 600 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
71%
Documented parameters
94%
Return-value docs
100%
References docs
15%

Topics

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RITAN")
Zimmermann, M. (2026). RITAN: Rapid Integration of Term Annotation and Network resources (Version 1.36.0) [Computer software]. https://bioconductor.org/packages/RITAN

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RITAN version 1.36.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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