wiggleplotr
Bioc currentMake read coverage plots from BigWig files
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
31 10 exported
Complexity
2.2 avg / 10 max
Call network
31 nodes / 37 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,573
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
21
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
10%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
Apache License 2.0
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-04-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 15includes a package overview page
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| ncoa7_cdss | – | – | – |
| ncoa7_exons | – | – | – |
| ncoa7_metadata | tibble | 9 × 4 | No other package |
Topics
Depended on by (3)
Bioconductor (3)
Suggested by (1)
People
- Kaur Alasoo author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("wiggleplotr")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.