curatedBreastData
Bioc currentCurated breast cancer gene expression data with survival and treatment information
Release Lineage
Entry release not yet recorded. Currently in release 3.23, requires R 4.6.
Description
Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
8 8 exported
Complexity
11.1 avg / 23 max
Call network
8 nodes / 5 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,455
Files
29
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
8
Internal functions
0
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.6.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-07-21
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 10 (1 internal)includes a package overview page
- Examples that run
- 100%9 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 93%
- Return-value docs
- 100%
- Help pages citing references
- 30%
Repository practices
4 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/waldronlab/curatedbreastdata on 2026-10-22.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| curatedBreastData_pData | data.frame | 2,719 × 153 | No other package |
Topics
People (from the free-text Author field)
- Katie Planey author
- Levi Waldron author maintainer
Cite
Cite this package
Run in R for the authors' entry:
citation("curatedBreastData")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.18129/b9.bioc.curatedbreastdata.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.