bugsigdbr
Bioc currentR-side access to published microbial signatures from BugSigDB
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
Description
The bugsigdbr package implements convenient access to bugsigdb.org from within R/Bioconductor. The goal of the package is to facilitate import of BugSigDB data into R/Bioconductor, provide utilities for extracting microbe signatures, and enable export of the extracted signatures to plain text files in standard file formats such as GMT.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
22 10 exported
Complexity
3.3 avg / 8 max
Call network
22 nodes / 15 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,067
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
12
Testing & CI
Has tests
Yes
Test-to-code ratio
0.40
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2021-11-02
Latest release
2026-04-28
Avg cadence
172 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 90%
Topics
Depended on by (1)
Bioconductor (1)
People
- Ludwig Geistlinger author maintainer
- NCI fnd
- Levi Waldron author
- Jennifer Wokaty author