curatedCRCData
Bioc currentColorectal Cancer Gene Expression Analysis
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
The curatedCRC package provides relevant functions and data for gene expression analysis in patients with colorectal cancer.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
4,450
Files
87
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
0
Testing
Has tests
No
Test-to-code ratio
–
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-12-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 35includes a package overview page
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
- curatedCRCData HTML
Repository practices
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/waldronlab/curatedcrcdata on 2026-10-18.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| FULLVcuratedCRCData_counts | – | – | – |
| GSE11237_eset | – | – | – |
| GSE12225.GPL3676_eset | – | – | – |
| GSE12945_eset | – | – | – |
| GSE13067_eset | – | – | – |
| GSE13294_eset | – | – | – |
| GSE14095_eset | – | – | – |
| GSE14333_eset | – | – | – |
| GSE16125.GPL5175_eset | – | – | – |
| GSE17536_eset | – | – | – |
| GSE17537_eset | – | – | – |
| GSE17538.GPL570_eset | – | – | – |
| GSE18105_eset | – | – | – |
| GSE2109_eset | – | – | – |
| GSE21510_eset | – | – | – |
| GSE21815_eset | – | – | – |
| GSE24549.GPL5175_eset | – | – | – |
| GSE24550.GPL5175_eset | – | – | – |
| GSE2630_eset | – | – | – |
| GSE26682.GPL570_eset | – | – | – |
| GSE26682.GPL96_eset | – | – | – |
| GSE26906_eset | – | – | – |
| GSE27544_eset | – | – | – |
| GSE28702_eset | – | – | – |
| GSE3294_eset | – | – | – |
| GSE33113_eset | – | – | – |
| GSE39582_eset | – | – | – |
| GSE3964_eset | – | – | – |
| GSE4045_eset | – | – | – |
| GSE4526_eset | – | – | – |
| GSE45270_eset | – | – | – |
| NormalizerVcuratedCRCData_counts | data.frame | 34 × 5 | No other package |
| TCGA.COAD_eset | – | – | – |
| TCGA.READ_eset | – | – | – |
| TCGA.RNASeqV2.READ_eset | – | – | – |
| TCGA.RNASeqV2_eset | – | – | – |
| curatedCRCData_counts | data.frame | 33 × 5 | No other package |
| template_crc | data.frame | 61 × 6 | No other package |
Topics
People
- Levi Waldron author maintainer
-
National Cancer Institute
funder
5U24CA180996
- Curtis Huttenhower author
- Princy Parsana author
- Markus Riester author
Cite
Cite this package
Run in R for the authors' entry:
citation("curatedCRCData")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1186/s13059-018-1511-4.
The repository also keeps a CITATION.cff.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.