rols
Bioc currentAn R interface to the Ontology Lookup Service
Release Lineage
Entered 2.11 · Oct 3, 2012
Current · Requires R 4.6
Description
The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
36 14 exported
Complexity
2.3 avg / 10 max
Call network
36 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,696
Files
24
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
21
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.18
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
28
First release
2013-01-15
Latest release
2026-09-02
Avg cadence
182 days
Cold removal rate
100%
Dep drift
13
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 5
- Examples that run
- 100%5 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 0%
- Help pages citing references
- 80%
Repository practices
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/shbrief/rols on 2026-10-25.
The R CMD check workflow runs on Linux
GitHub Pages site last deployed 2026-10-10 · The repository has a site deploy workflow
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (1)
People
- Sehyun Oh maintainer
- Tiage Chedraoui Silva contributor
- Andrew Clugston contributor
- Laurent Gatto author
- Levi Waldron contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("rols")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.