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Topic: VariantAnnotation or MicroarrayData or SequencingData

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317 packages on Bioconductor tagged VariantAnnotation or MicroarrayData or SequencingData, most distinct IPs first

VariantAnnotation, MicroarrayData and SequencingData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
celldex
Index of Reference Cell Type DatasetsAaron Lun		Aaron Lunexperiment5 May 20265,64995
HSMMSingleCell
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell		Cole Trapnellexperiment5 May 20263,5880
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,41926
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,7228
airway
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love		Michael Loveexperiment5 May 20262,71525
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,208121
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,370108
multiMiR
Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey		Spencer Mahaffeysoftware28 Apr 20261,36653
tximportData
tximportDataMichael Love		Michael Loveexperiment5 May 20261,2950
sesameData
Supporting Data for SeSAMe PackageWanding Zhou		Wanding Zhouexperiment5 May 20261,19872
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,16112
PureCN
Copy number calling and SNV classification using targeted short read sequencingMarkus Riester		Markus Riestersoftware28 Apr 20261,083101
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0760
TENxPBMCData
PBMC data from 10X GenomicsStephanie Hicks		Stephanie Hicksexperiment5 May 20261,01983
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269600
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20269497
podkat
Position-Dependent Kernel Association TestUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 202694659
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202690778
curatedMetagenomicData
Curated Metagenomic Data of the Human MicrobiomeLucas schiffer		Lucas schifferexperiment5 May 2026835148
HelloRanges
Introduce *Ranges to bedtools usersMichael Lawrence		Michael Lawrencesoftware28 Apr 202678378
TVTB
TVTB: The VCF Tool BoxKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 2026758159
StructuralVariantAnnotation
Variant annotations for structural variantsDaniel Cameron		Daniel Cameronsoftware28 Apr 202675890
minfiData
Example data for the Illumina Methylation 450k arrayKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 2026731146
PCAN
Phenotype Consensus ANalysis (PCAN)Matthew Page		Matthew Pagesoftware28 Apr 202672914
musicatk
Mutational Signature Comprehensive Analysis ToolkitJoshua D. Campbell		Joshua D. Campbellsoftware28 Apr 2026726275
appreci8R
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPVSarah Sandmann		Sarah Sandmannsoftware28 Apr 2026706162
myvariant
Accesses MyVariant.info variant query and annotation servicesAdam Mark, Chunlei Wu		Adam Mark, Chunlei Wusoftware28 Apr 2026701123
ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasAnil Thanki		Anil Thankisoftware28 Apr 202668664
seqCAT
High Throughput Sequencing Cell Authentication ToolkitErik Fasterius		Erik Fasteriussoftware28 Apr 202668099