Topics › BiocViews › Software › BiologicalQuestion
VariantAnnotation
biocViews- Packages
- 3535 tagged here
- Distinct IPs
- 616a month, median
- Failing builds
- 3of 35 built
- Release
- 3.23Bioconductor now
Packages
PackageDistinct IPsBuildsFirst release
VariantAnnotationAnnotation of Genetic Variants9,771 distinct IPs a month, build warningsfirst in a release 1 Nov 2011maftoolsSummarize, Analyze and Visualize MAF Files3,419 distinct IPs a month, build warningsfirst in a release 18 Oct 2016RsubreadMapping, quantification and variant analysis of sequencing data2,722 distinct IPs a month, build warningsfirst in a release 14 Apr 2011PureCNCopy number calling and SNV classification using targeted short read sequencing1,083 distinct IPs a month, build OKfirst in a release 4 May 2016podkatPosition-Dependent Kernel Association Test946 distinct IPs a month, build OKfirst in a release 17 Apr 2015HelloRangesIntroduce *Ranges to bedtools users783 distinct IPs a month, build OKfirst in a release 18 Oct 2016TVTBTVTB: The VCF Tool Box758 distinct IPs a month, build OKfirst in a release 18 Oct 2016StructuralVariantAnnotationVariant annotations for structural variants758 distinct IPs a month, build OKfirst in a release 3 May 2019PCANPhenotype Consensus ANalysis (PCAN)729 distinct IPs a month, build OKfirst in a release 4 May 2016musicatkMutational Signature Comprehensive Analysis Toolkit726 distinct IPs a month, build OKfirst in a release 28 Oct 2020appreci8Rappreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV706 distinct IPs a month, build OKfirst in a release 31 Oct 2018myvariantAccesses MyVariant.info variant query and annotation services701 distinct IPs a month, build OKfirst in a release 14 Oct 2015seqCATHigh Throughput Sequencing Cell Authentication Toolkit680 distinct IPs a month, build OKfirst in a release 31 Oct 2017cellbaseRQuerying annotation data from the high performance Cellbase web666 distinct IPs a month, build OKfirst in a release 25 Apr 2017ProteoDiscoGeneration of customized protein variant databases from genomic variants, splice-junctions and manual sequences658 distinct IPs a month, build warningsfirst in a release 27 Oct 2021VCFArrayRepresenting on-disk / remote VCF files as array-like objects657 distinct IPs a month, build OKfirst in a release 3 May 2019svaRetroRetrotransposed transcript detection from structural variants619 distinct IPs a month, build warningsfirst in a release 27 Oct 2021SigsPackMutational Signature Estimation for Single Samples616 distinct IPs a month, build OKfirst in a release 30 Oct 2019geneAttributionIdentification of candidate genes associated with genetic variation610 distinct IPs a month, build OKfirst in a release 18 Oct 2016katdetectrDetection, Characterization and Visualization of Kataegis in Sequencing Data582 distinct IPs a month, build OKfirst in a release 2 Nov 2022svaNUMTNUMT detection from structural variant calls581 distinct IPs a month, build OKfirst in a release 27 Oct 2021ipdDbIPD IMGT/HLA and IPD KIR database for Homo sapiens574 distinct IPs a month, build OKfirst in a release 31 Oct 2018cageminerCandidate Gene Miner573 distinct IPs a month, build OKfirst in a release 27 Oct 2021OutSpliceComparison of Splicing Events between Tumor and Normal Samples567 distinct IPs a month, build OKfirst in a release 26 Apr 2023MouseFMIn-silico methods for genetic finemapping in inbred mice532 distinct IPs a month, build errorfirst in a release 28 Oct 2020AlphaMissenseRAccessing AlphaMissense Data Resources in R504 distinct IPs a month, build errorfirst in a release 1 May 2024tadarTranscriptome Analysis of Differential Allelic Representation501 distinct IPs a month, build OKfirst in a release 25 Oct 2023transmogRModify a set of reference sequences using a set of variants479 distinct IPs a month, build OKfirst in a release 1 May 2024SNPediaRQuery data from SNPedia477 distinct IPs a month, build errorfirst in a release 18 Oct 2016GIGSEAGenotype Imputed Gene Set Enrichment Analysis466 distinct IPs a month, build OKfirst in a release 31 Oct 2018REBETThe subREgion-based BurdEn Test (REBET)466 distinct IPs a month, build OKfirst in a release 31 Oct 2018lineagespotDetection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing445 distinct IPs a month, build OKfirst in a release 27 Apr 2022RAREsimSimulation of Rare Variant Genetic Data400 distinct IPs a month, build OKfirst in a release 27 Apr 2022paratiParental Allele Transmission Inference for Trio Genotype Data313 distinct IPs a month, build OKfirst in a release 29 Apr 2026rigvfR interface to the IGVF Catalog297 distinct IPs a month, build OKfirst in a release 16 Apr 2025
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