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tximportData

Bioc current

tximportData

v1.40.0 · experiment · GPL (>= 2)
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.

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Topics

ExperimentData
ExperimentData › TechnologyData › SequencingData
ExperimentData › TechnologyData › SequencingData › RNASeqData

Depended on by (9)

Bioconductor (9)

DESeq2 eds fishpond TDbasedUFE tximeta tximport variancePartition HumanTranscriptomeCompendium rkal

People

Michael Love