GSVAdata
Bioc currentData employed in the vignette of the GSVA package
Release Lineage
Entered 2.13 · Oct 15, 2013
Current · Requires R 4.6
Description
This package stores the data employed in the vignette of the GSVA package. These data belong to the following publications: Cahoy et al. J Neurosci 28:264-278, 2008; Carrel and Willard, Nature, 434:400-404, 2005; Huang et al. PNAS, 104:9758-9763, 2007; Pickrell et al. Nature, 464:768-722, 2010; Skaletsky et al. Nature, 423:825-837; Verhaak et al. Cancer Cell 17:98-110, 2010; Costa et al. FEBS J, 288:2311-2331, 2021.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 1 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
548
Files
32
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
0
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
26
First release
2013-12-13
Latest release
2026-07-25
Avg cadence
182 days
Cold removal rate
100%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 9includes a package overview page
- Examples that run
- 100%8 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 44%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| XiEgenesEntrez | vector | 66 elements | No other package |
| annotEntrez220212 | data.frame | 23,662 × 2 | No other package |
| brainTxDbSets | list | 4 elements | No other package |
| c2BroadSets | GeneSetCollection | 3,272 elements | 2 packages |
| gbm_eset | – | – | – |
| geneExpCostaEtAl2021 | – | – | – |
| huangArrayRMAnoBatchCommon_eset | – | – | – |
| human_cerebellum_coldata_250x4816 | data.frame | 4,816 × 2 | No other package |
| human_cerebellum_rowdata_250x4816 | data.frame | 250 × 3 | No other package |
| human_cerebellum_spatialcoords_250x4816 | data.frame | 4,816 × 3 | No other package |
| msYgenesEntrez | vector | 34 elements | No other package |
| pickrellCountsArgonneCQNcommon_eset | – | – | – |
| pickrellCountsYaleCQNcommon_eset | – | – | – |
| protExpCostaEtAl2021 | – | – | – |
Topics
Depended on by (1)
Bioconductor (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GSVAdata")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.